PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	55.4	2.6e-17	193	243	112	161
YABBY 112 vppvirPPekrq.rvPsaynrfikeeiqrikasnPdishreafsaaaknWa 161 + p+ r r+ r Ps yn fi+eei r+ka+nP ++h++af aaa+nWa 112717 193 ARPAKRAKKTRKpRDPSPYNVFIREEIPRLKAENPAMTHKDAFKAAARNWA 243 445556555443499***********************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.9E-22	50	243	IPR006780	YABBY protein
SuperFamily	SSF47095	2.09E-7	197	246	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	2.7E-5	197	245	IPR009071	High mobility group box domain
CDD	cd00084	8.22E-5	204	242	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009909	Biological Process	regulation of flower development
GO:0009933	Biological Process	meristem structural organization
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0010093	Biological Process	specification of floral organ identity
GO:0010154	Biological Process	fruit development
GO:0010158	Biological Process	abaxial cell fate specification
GO:0010159	Biological Process	specification of organ position
GO:0010450	Biological Process	inflorescence meristem growth
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MGPNLQAASG SNMSDAAAAE ARWARCDAPT DVDAVARGDV DRARDDGSKT VHVDCQRCRS 60 RLEVRVPAAL LAEGSATVRC GACGVHLKIA VPPALAPVHP PRPAFSAMTK PAERLPAASA 120 PRPTQQRPAT GASLQLSAGA LASFLDPAVC VAMGANPTDP QLRKAAEEFW RSCDGDANAV 180 DPNATYDTDL APARPAKRAK KTRKPRDPSP YNVFIREEIP RLKAENPAMT HKDAFKAAAR 240 NWAGSSLNMR SAAYVPDPVL AAAAAAAHAN VLDAHANVTD AATRAAILQK LKPHLLRGRV 300 EDARAEAAAA RRWEMDLTTT NGVDGPTGAK GVVDRYAGDA FASVHEGRDE PTHRGPVRPK 360 TSWSSYRSTH EAFEPID*

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MGPNLQAASG SNMSDAAAAE ARWARCDAPT DVDAVARGDV DRARDDGSKT VHVDCQRCRS  60
RLEVRVPAAL LAEGSATVRC GACGVHLKIA VPPALAPVHP PRPAFSAMTK PAERLPAASA  120
PRPTQQRPAT GASLQLSAGA LASFLDPAVC VAMGANPTDP QLRKAAEEFW RSCDGDANAV  180
DPNATYDTDL APARPAKRAK KTRKPRDPSP YNVFIREEIP RLKAENPAMT HKDAFKAAAR  240
NWAGSSLNMR SAAYVPDPVL AAAAAAAHAN VLDAHANVTD AATRAAILQK LKPHLLRGRV  300
EDARAEAAAA RRWEMDLTTT NGVDGPTGAK GVVDRYAGDA FASVHEGRDE PTHRGPVRPK  360
TSWSSYRSTH EAFEPID*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00620	PBM	Transfer from AT2G45190	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP001323	0.0	CP001323.1 Micromonas sp. RCC299 chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002499636.1	0.0	yabby-like protein
TrEMBL	C1DY70	0.0	C1DY70_MICCC; Yabby-like protein
STRING	XP_002499636.1	0.0	(Micromonas sp. RCC299)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP15551	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	2e-10	YABBY family protein

Link Out ? help Back to Top
Phytozome	112717
Entrez Gene	8241310

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]