PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 111756
Common NameSELMODRAFT_111756, SELMODRAFT_126160
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family ZF-HD
Protein Properties Length: 51aa    MW: 5695.43 Da    PI: 7.8732
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
111756genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer491.5e-15551455
  ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRr 55
                 v Y  C++N+  +  + ++DGC Ef +s +        kC ACgCHR+FH r
       111756  5 VAYGACKRNQNHTSATPVLDGCMEFSSSFK-----GERKCEACGCHRSFHER 51
                 78************************9944.....4589***********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.6E-12551IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-4551IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152315.029751IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 51 aa     Download sequence    Send to blast
MDVLVAYGAC KRNQNHTSAT PVLDGCMEFS SSFKGERKCE ACGCHRSFHE R
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024517117.11e-30uncharacterized protein LOC112341377
TrEMBLD8S9A72e-30D8S9A7_SELML; Uncharacterized protein (Fragment)
STRINGEFJ114793e-31(Selaginella moellendorffii)
STRINGEFJ187813e-31(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28917.11e-08mini zinc finger 2
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]