PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 111647
Common NameSELMODRAFT_111647, SELMODRAFT_127857
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family DBB
Protein Properties Length: 112aa    MW: 12151.1 Da    PI: 7.242
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
111647genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box27.75.6e-09434536
  zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg 36
               C+ +e+ +++lfC  ++  lC +C ++ H g
    111647  4 LCDVCESAPARLFCAADEAALCSKCDEKVH-G 34
              7***************************99.5 PP
2zf-B_box27.18.6e-095392338
  zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38
               ++C+ +e+ ++ ++C  +++ lC +C +  H g    H+
    111647 53 VPRCDICESAPAFFYCGIDGTSLCLQCDMDVHTGgkktHE 92
              589*****************************77777786 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.58147IPR000315B-box-type zinc finger
SMARTSM003367.6E-9147IPR000315B-box-type zinc finger
PfamPF006433.1E-7342IPR000315B-box-type zinc finger
CDDcd000213.32E-6347No hitNo description
SMARTSM003361.7E-95196IPR000315B-box-type zinc finger
PROSITE profilePS501198.5465196IPR000315B-box-type zinc finger
PfamPF006431.0E-65392IPR000315B-box-type zinc finger
CDDcd000217.32E-65486No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0070370Biological Processcellular heat acclimation
GO:0071483Biological Processcellular response to blue light
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
MRTLCDVCES APARLFCAAD EAALCSKCDE KVHGCNKLAS RHVRLQLAEA RAVPRCDICE  60
SAPAFFYCGI DGTSLCLQCD MDVHTGGKKT HERYLMLGQR VEVITGLLAS R*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024517934.12e-71B-box zinc finger protein 18 isoform X3
RefseqXP_024540627.12e-71B-box zinc finger protein 18 isoform X3
SwissprotC0SVM52e-49BBX19_ARATH; B-box zinc finger protein 19
TrEMBLD8S9643e-75D8S964_SELML; Uncharacterized protein
STRINGEFJ105484e-76(Selaginella moellendorffii)
STRINGEFJ192924e-76(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP33521628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.19e-52DBB family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]