PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 110501
Common NameSELMODRAFT_110501
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family C3H
Protein Properties Length: 317aa    MW: 35768.6 Da    PI: 7.1508
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
110501genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.51.8e-06323526
             --SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
             lC++++  G C  Gd+C+F+H+
   110501  3 LCKYYLH-GACLKGDSCQFSHS 23
             8**7777.*************8 PP
2zf-CCCH261.6e-083151526
             --SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
             +C f++r G C+yG+rC++ H+
   110501 31 ICTFYQR-GVCSYGSRCRYEHV 51
             7******.***********997 PP
3zf-CCCH231.4e-07109131326
              S---SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
              +++C+ fa+ G+C+yG++C+  Hg
   110501 109 RPICS-FAAAGYCPYGNSCSNLHG 131
              79999.*************86665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0057124IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.821125IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-7223IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-5326IPR000571Zinc finger, CCCH-type
PfamPF146080.003422No hitNo description
SMARTSM003566.7E-52652IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.0652653IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-52850IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-53150IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-63151IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.38106133IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-4107132IPR000571Zinc finger, CCCH-type
PfamPF006429.7E-5109131IPR000571Zinc finger, CCCH-type
SuperFamilySSF578506.82E-10167238No hitNo description
Gene3DG3DSA:3.30.40.102.0E-9169234IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001620.0073174232No hitNo description
PfamPF000978.8E-6175231IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS5008911.929175232IPR001841Zinc finger, RING-type
SMARTSM001841.0E-6175231IPR001841Zinc finger, RING-type
PROSITE patternPS005180199208IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.12261289IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.249261290IPR000571Zinc finger, CCCH-type
PfamPF146080.082266287No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
RILCKYYLHG ACLKGDSCQF SHSFDDPSSN ICTFYQRGVC SYGSRCRYEH VRLPRPKLPF  60
LPLLNAWQER PLVPPPAPSP SLATFDTFEP DPWEEFQAPD TASLDLADRP ICSFAAAGYC  120
PYGNSCSNLH GDLCESCGKH CLHPFREAER EEHREQCVRS QKRLELLRMS QDIECSVCLE  180
RVLSKPSMSD RKFGILSGCD HPFCIACIRD WRGGTRPGMD LETIVRACPI CRVSSHYVIP  240
SVVWYSNTEE KEEIVNGYKN KLSSIDCKYF EYGNSTCPFG TSCFYRHAYG DGTKEEVKLR  300
HLGAADGTTV IAKNIR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024540014.10.0E3 ubiquitin-protein ligase makorin
SwissprotE0X9N41e-126C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLD8S7610.0D8S761_SELML; Uncharacterized protein (Fragment)
STRINGEFJ196970.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP40671523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-121C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]
  2. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]