PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 108954
Common NameMICPUN_108954
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family C3H
Protein Properties Length: 352aa    MW: 35638.8 Da    PI: 8.2295
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
108954genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.72.3e-0985105526
              --SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
               C+ f++ G C++Gd C FaHg
   108954  85 ACPEFRK-GSCPRGDACEFAHG 105
              5******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.26380107IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-480106IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-785105IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-585107IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4112144IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.512115139IPR000571Zinc finger, CCCH-type
SMARTSM0035617115138IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0061157Biological ProcessmRNA destabilization
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003727Molecular Functionsingle-stranded RNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MMNGTTMNGT TMNGPKQSNA GHSSGNLSNE PDAETRLSDD FRMYEFKVRR CSRTRAHDWT  60
ECPFTHPGEK ARRRDPRRFN YCGTACPEFR KGSCPRGDAC EFAHGVFECW LHPSRYRTQL  120
CKDGLQCARR ACFFAHASHQ LRPPTDAFGN VLAGMAGGGN RSGVVEGMSG GHGGASYCQT  180
VPVPGVHVSS GGGLGYSGHG SGNGSGSGSG NGSSGGSGGS NSPGGSPRDG LGGVGGGGRS  240
ARGSDDGNGN TGSSGNTAAA AGFNAFGNGG RDGSGAGSGT FEPPNAVAPA PPPPAKPQWV  300
PTVDHNGDVH LNGAGIKGPN APGSPGPPRV SSFQHLGMIE GVLGDDQFYG A*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0013290.0CP001329.1 Micromonas sp. RCC299 chromosome 9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002504751.10.0predicted protein
TrEMBLC1ED300.0C1ED30_MICCC; Uncharacterized protein
STRINGXP_002504751.10.0(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP601532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25900.23e-60C3H family protein
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]