 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
108666 |
| Common Name | MICPUN_108666 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
|
| Family |
C3H |
| Protein Properties |
Length: 228aa MW: 24214.4 Da PI: 4.3896 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 108666 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 25.6 | 2.1e-08 | 3 | 25 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26
+e+C++++ G C+ G+ C+F+H+
108666 3 REICKYYMH-GACNKGAACRFSHD 25
79***8888.*************6 PP
|
| 2 | zf-CCCH | 28.7 | 2.3e-09 | 29 | 53 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
+k C ++++ G C+yGd+C++ H+
108666 29 PKSTVCTYYLA-GNCSYGDKCRYDHV 53
57789******.*************7 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50103 | 15.525 | 1 | 27 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 5.3E-6 | 1 | 26 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 3.6E-6 | 3 | 25 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 4.84E-7 | 3 | 25 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 2.0E-4 | 4 | 26 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 16.408 | 28 | 55 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 5.3E-7 | 28 | 54 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 6.2E-7 | 30 | 53 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 4.19E-6 | 30 | 52 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.3E-5 | 30 | 52 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 228 aa
Download sequence Send
to blast |
MSREICKYYM HGACNKGAAC RFSHDIQAPK STVCTYYLAG NCSYGDKCRY DHVRPAGIQG 60
PPAGLNRPAP PMTVPRPNVG GNISAGAREF VPLNAMMGGM SVGGARPYHP SAQAPAWQPA 120
PPGGAYPPQG GGDEQDDWGY EDEDGNWVSF NEGSGKEEVE FLKSQLPSED DFLDGLGADT 180
GPHREEQDGG GDEWGYYDDA GNWVGFGGEV DSYLHAQQGG AYGGQVR*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | CP001328 | 0.0 | CP001328.1 Micromonas sp. RCC299 chromosome 7, complete sequence. |
