PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantTFDB

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

108283

Common Name

MICPUN_108283

Organism

Micromonas sp. RCC299

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas

Family

Protein Properties

Length: 130aa MW: 13554.9 Da PI: 10.8726

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
108283	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	25.1	5.5e-08	48	100	114	165
YABBY 114 pvirPPekrq.rvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPk 165 p+ + ekr r+P+ +n f++ + ++k+ nP s ++ f++ a Wa P+ 108283 48 PIKKKKEKRApRAPTKFNEFMRTKVAQVKSDNPTKSPKDIFAMCAAMWATAPE 100 67788899966**************************************9885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47095	6.02E-9	47	103	IPR009071	High mobility group box domain
Pfam	PF04690	1.3E-6	47	100	IPR006780	YABBY protein
Gene3D	G3DSA:1.10.30.10	5.1E-5	58	103	IPR009071	High mobility group box domain
CDD	cd00084	2.31E-4	58	100	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 130 aa Download sequence Send to blast
MEMSKLAPAF AKLAEAAQEI SEIFAAAGGV TLGKRGPGAL LLDADGKPIK KKKEKRAPRA 60 PTKFNEFMRT KVAQVKSDNP TKSPKDIFAM CAAMWATAPE NPKSSAAAAL PPAKSEKGSL 120 KSGKGKSKK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP001326	0.0	CP001326.1 Micromonas sp. RCC299 chromosome 5, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002502162.1	3e-85	predicted protein
TrEMBL	C1E6G0	6e-84	C1E6G0_MICCC; Uncharacterized protein
STRING	XP_002502162.1	1e-84	(Micromonas sp. RCC299)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP9255	4	5

Link Out ? help Back to Top
Phytozome	108283
Entrez Gene	8243449

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]