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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
108103 |
| Common Name | MICPUN_108103 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
|
| Family |
DBB |
| Protein Properties |
Length: 217aa MW: 23329.3 Da PI: 4.5013 |
| Description |
DBB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 108103 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-B_box | 23.2 | 1.4e-07 | 3 | 45 | 4 | 40 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
+ C+ + +++ l C +++ +C +C +++H+ H++v
108103 3 TFCEVCTTNPAALVCCSDDAVMCGSCDESIHSAnpvvrkHERV 45
67*****************************667888888876 PP
|
| 2 | zf-B_box | 22 | 3.4e-07 | 52 | 89 | 2 | 37 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..H 37
e+++C+ ++ +++ C++++ +lC++C ++H+ H
108103 52 EKPNCDICQVNPVYVVCHEDRAFLCRSCDISIHSAndH 89
789******************************65664 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009641 | Biological Process | shade avoidance |
| GO:0009658 | Biological Process | chloroplast organization |
| GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process |
| GO:0010099 | Biological Process | regulation of photomorphogenesis |
| GO:0015995 | Biological Process | chlorophyll biosynthetic process |
| GO:0016607 | Cellular Component | nuclear speck |
| GO:0008270 | Molecular Function | zinc ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 217 aa
Download sequence Send
to blast |
MKTFCEVCTT NPAALVCCSD DAVMCGSCDE SIHSANPVVR KHERVAFKST SEKPNCDICQ 60
VNPVYVVCHE DRAFLCRSCD ISIHSANDHV AKHQRFLMTG ITVELDAVGA TAKEGEVAET 120
PVVTQPPMAK KAKGTKRKIE QQFQAPSANS EDGLVPSMGG AEAAADPMAS EEEFNSFVQD 180
FLGNTKEGKD VNMSDFLDNF FDDIPAGNDF GVVPVM*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Acts as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By light. {ECO:0000269|PubMed:18182030}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | CP001325 | 0.0 | CP001325.1 Micromonas sp. RCC299 chromosome 4, complete sequence. |
