PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 107503 | ||||||||
Common Name | SELMODRAFT_107503 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | HSF | ||||||||
Protein Properties | Length: 191aa MW: 21807.7 Da PI: 10.0969 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 119.3 | 2.2e-37 | 26 | 117 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y++++d++++ +isws+++nsfvv+++ ef++++Lp+yFkhsn++SFvRQLn+YgFkkv+ ++ weF+++ F +g+k+ll++i+ 107503 26 FLTKTYDMVDDPATNGIISWSATNNSFVVWNPPEFSRDLLPRYFKHSNYSSFVRQLNTYGFKKVDPDR---------WEFANEDFLRGQKSLLKNIH 113 9********************999*****************************************999.........******************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+++ 107503 114 RRRN 117 *986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 3.67E-37 | 21 | 115 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 4.2E-61 | 22 | 115 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 5.9E-40 | 23 | 115 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 1.8E-19 | 26 | 49 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.1E-32 | 26 | 115 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.8E-19 | 64 | 76 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 65 | 89 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.8E-19 | 77 | 89 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MQESGLRSAA SPQPLEALQG NAPPPFLTKT YDMVDDPATN GIISWSATNN SFVVWNPPEF 60 SRDLLPRYFK HSNYSSFVRQ LNTYGFKKVD PDRWEFANED FLRGQKSLLK NIHRRRNVGG 120 TSSGSPRSSP SISTVVAEQQ PCVEVGQFGG VEGEVERLRR DRNMLMVELV RMRQQQILTQ 180 RGMQQMMQRL Q |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 6e-27 | 24 | 115 | 18 | 120 | Heat shock factor protein 1 |
5d5u_B | 6e-27 | 24 | 115 | 27 | 129 | Heat shock factor protein 1 |
5d5v_B | 6e-27 | 24 | 115 | 27 | 129 | Heat shock factor protein 1 |
5d5v_D | 6e-27 | 24 | 115 | 27 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 156 | 161 | RLRRDR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002977898.2 | 1e-139 | heat shock factor protein HSF30 | ||||
Refseq | XP_002979424.2 | 1e-139 | heat stress transcription factor A-2b | ||||
Swissprot | Q9LQM7 | 5e-77 | HFA1D_ARATH; Heat stress transcription factor A-1d | ||||
TrEMBL | D8S3C3 | 1e-139 | D8S3C3_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ21236 | 1e-140 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP96 | 17 | 233 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32330.1 | 3e-61 | heat shock transcription factor A1D |
Link Out ? help Back to Top | |
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Phytozome | 107503 |
Entrez Gene | 9656838 |
Publications ? help Back to Top | |||
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