PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantTFDB

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

106430

Common Name

MICPUN_106430

Organism

Micromonas sp. RCC299

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas

Family

Protein Properties

Length: 190aa MW: 20400.9 Da PI: 10.0369

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
106430	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	100.4	1.8e-31	80	136	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RR++Rak+e+e++l +ksrkpylheSRh+hA rR Rg gGrF 106430 80 EEPVYVNAKQYHGILRRRAARAKAESENRL-IKSRKPYLHESRHNHAQRRVRGAGGRF 136 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	2.0E-34	78	139	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.026	79	139	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.8E-27	81	136	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.1E-23	82	104	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	84	104	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	1.1E-23	113	136	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010262	Biological Process	somatic embryogenesis
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0055046	Biological Process	microgametogenesis
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MQAPQGAVVA YDPAQVDPNN INGAAPSNMN GEQYLRAAYA TYDPYGYSGM MAYGQQTMVA 60 PHMMGGLQSA RMMLPSEMEE EPVYVNAKQY HGILRRRAAR AKAESENRLI KSRKPYLHES 120 RHNHAQRRVR GAGGRFLTKA ELAELEKKNG DGADGGEDGG KAGSSDAKAN GNGDAKTETK 180 AAKGKKGKK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_A	4e-22	80	141	2	64	HAPB protein
4g92_A	4e-22	80	141	2	64	HAPB protein
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP001331	0.0	CP001331.1 Micromonas sp. RCC299 chromosome 13, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002505528.1	1e-136	predicted protein
Swissprot	Q945M9	4e-34	NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBL	C1EF49	1e-134	C1EF49_MICCC; Uncharacterized protein
STRING	XP_002505528.1	1e-135	(Micromonas sp. RCC299)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP9541	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	3e-28	nuclear factor Y, subunit A7

Link Out ? help Back to Top
Phytozome	106430
Entrez Gene	8248703

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]