PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 106228
Common NameMICPUN_106228
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family MYB_related
Protein Properties Length: 538aa    MW: 54078 Da    PI: 9.2917
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
106228genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.49.1e-151963147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT +E++++++a++++  + Wk+I  ++g ++t  q++s+ qky
           106228 19 RESWTDQEHDRFLEAINLYDRD-WKKIGDYVG-TKTVIQIRSHAQKY 63
                     789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.8E-171369IPR009057Homeodomain-like
PROSITE profilePS5129416.9181468IPR017930Myb domain
TIGRFAMsTIGR015574.5E-171766IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.605.7E-71769IPR009057Homeodomain-like
SMARTSM007174.3E-121866IPR001005SANT/Myb domain
PfamPF002493.2E-121963IPR001005SANT/Myb domain
CDDcd001676.42E-92164No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0032922Biological Processcircadian regulation of gene expression
GO:0043966Biological Processhistone H3 acetylation
GO:0046686Biological Processresponse to cadmium ion
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MKQAEASKTR KPYTITKSRE SWTDQEHDRF LEAINLYDRD WKKIGDYVGT KTVIQIRSHA  60
QKYFLKVQKN GTGEHIPPPR PKRKSAQPYP QKAAVGGGRD GKQAKKGGGA GVGKGTGVSL  120
APPEGGGGPP MGVRHASPGV MGAPPPVNLV GPGGVLGGGY PMATSVGRWD GGMRGPHPAG  180
PGPMSSMGAM GDGSWGGGMP SGMGGMSDGG FGGARGDGVM RGHQQGVMTH HRDVMIGHGG  240
GNGMNPPMGS YPVGPMGLKG FGNGQGGGGG GGGGGGGGNV IIGRGGNLKP SPSNNPDFVV  300
VYTFLAECFD PEVKGHAEKL RAMSPIDRET TTLLMRNLSS NLMCQRMWED QVQLIGAGCP  360
TFVNATYDEK GVVGVNVPSG AVVHAGSGQV ASGNDENSNG DGSGAGDGVT DPLNGGGSGD  420
GSGAGGDNGG RGALKGSAKN VPATAKDGRP SASNGPNGGG TTYVHASQFT RLQPHPVVDV  480
GTWSDQYVGE GPGASYPGGG DDKGFDKGGR SRSNSGSPTE DLIGKGVPED VYITGGA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00338DAPTransfer from AT3G09600Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0013300.0CP001330.1 Micromonas sp. RCC299 chromosome 11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002504831.10.0predicted protein
TrEMBLC1EDP40.0C1EDP4_MICCC; Uncharacterized protein
STRINGXP_002504831.10.0(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP4541427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09600.11e-47MYB_related family protein
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]