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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
106146 |
| Common Name | MICPUN_106146 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
|
| Family |
ARR-B |
| Protein Properties |
Length: 489aa MW: 50680.9 Da PI: 6.863 |
| Description |
ARR-B family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 106146 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | G2-like | 91.2 | 8.9e-29 | 224 | 277 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
kpr++W+ eLH++Fv av+qL G++kA+Pk+il+lm+v+gLt+e+v+SHLQkYRl
106146 224 KPRVVWSAELHQQFVTAVNQL-GIDKAVPKRILDLMGVQGLTRENVASHLQKYRL 277
79*******************.********************************8 PP
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| 2 | Response_reg | 88.1 | 2.5e-29 | 16 | 124 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95
vl+vdD+pl +++++++l++ +y ev++++ g eal++l+e++ +D++l D+ mp+mdG++ll++i+ e ++p+++++a+ + + +l+ + Ga
106146 16 VLVVDDDPLCLKIVEKMLKRCQY-EVTTFSRGAEALKTLRERKddFDIVLSDVHMPDMDGFKLLEHIALEL-DIPVMMMSANCATDVVLRGIIHGAV 110
89*********************.***************777777**********************8765.8************************ PP
EEEESS--HHHHHH CS
Response_reg 96 dflsKpfdpeelvk 109
d+l Kp+ +eel++
106146 111 DYLLKPVRIEELRN 124
************97 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009873 | Biological Process | ethylene-activated signaling pathway |
| GO:0010082 | Biological Process | regulation of root meristem growth |
| GO:0010119 | Biological Process | regulation of stomatal movement |
| GO:0010150 | Biological Process | leaf senescence |
| GO:0071368 | Biological Process | cellular response to cytokinin stimulus |
| GO:0080113 | Biological Process | regulation of seed growth |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 489 aa
Download sequence Send
to blast |
MSTPAVSKGF PIGLRVLVVD DDPLCLKIVE KMLKRCQYEV TTFSRGAEAL KTLRERKDDF 60
DIVLSDVHMP DMDGFKLLEH IALELDIPVM MMSANCATDV VLRGIIHGAV DYLLKPVRIE 120
ELRNIWQHVV RRKRESSQGN LRSGEGGSNG RTVSGGSTGE GGGKDSKGSS EQHGDAKDKT 180
GSAGGSGGSS KRKKGSGKKG DEGTDEVKDG SGGDENEDSS ALKKPRVVWS AELHQQFVTA 240
VNQLGIDKAV PKRILDLMGV QGLTRENVAS HLQKYRLYLK RLQGVNSGGA PGGGPGFMSP 300
IALDGSMVQG GPGGRVGSPA IGGPNGPIMV GHGHIDPAML AGGAPQTIQM GMVYGGPGMG 360
PPQMMAPNGK GGGGMPGGYV MQPGQMMAPN GQMMPVGQMG PGGMMVQGPG GGMMQMHDGG 420
MMNGNGSYGS LQNMKQGNGV VMMPNGGMGG VDGAIPNMAT GLINGQGLPD DDVLDMFLKD 480
GLPEGEGF*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | CP001576 | 0.0 | CP001576.1 Micromonas sp. RCC299 chromosome 10, complete sequence. |
| Publications
? help Back to Top |
- Worden AZ, et al.
Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
Science, 2009. 324(5924): p. 268-72
[PMID:19359590] - Takahashi N, et al.
Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
Curr. Biol., 2013. 23(18): p. 1812-7
[PMID:24035544] - Ge XM, et al.
Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis.
Plant J., 2015. 82(1): p. 138-50
[PMID:25704455] - Takahashi N,Umeda M
Cytokinins promote onset of endoreplication by controlling cell cycle machinery.
Plant Signal Behav, 2014. 9(8): p. e29396
[PMID:25763620] - Kobayashi K, et al.
Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
Plant Physiol., 2017. 173(4): p. 2340-2355
[PMID:28193764] - Arnaud D, et al.
Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis.
Plant Cell, 2017. 29(3): p. 543-559
[PMID:28254779] - Zhang TQ, et al.
A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
Plant Cell, 2017. 29(5): p. 1073-1087
[PMID:28389585] - Meng WJ, et al.
Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
Plant Cell, 2017. 29(6): p. 1357-1372
[PMID:28576846] - Zhang F,May A,Irish VF
Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
Trends Plant Sci., 2017. 22(10): p. 815-817
[PMID:28886911] - Takatsuka H,Higaki T,Umeda M
Actin Reorganization Triggers Rapid Cell Elongation in Roots.
Plant Physiol., 2018. 178(3): p. 1130-1141
[PMID:30185441]
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