PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 105954
Common NameMICPUN_105954
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family SBP
Protein Properties Length: 345aa    MW: 37145.5 Da    PI: 8.5801
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
105954genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP28.15.6e-0977159175
             --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTE....EEEE-TTTSSEEETTT--SS......--S-STTTT-------S CS
     SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgl....eqrfCqqCsrfhelsefDee......krsCrrrLakhnerrrk 75 
             +Cqv gC+ + s+++    r + C++h  a +v ++g+    + rfC qC +fhel+ f +       ++ C +  a   +rr+k
  105954  77 ICQVVGCDIEYSSTH--ECRARACQTHCSALSVRLEGQdpeqQFRFCYQCHKFHELDAFRNPdgtlrpRHNCYQSQALRLDRRKK 159
             5******99988876..57999************9985332256***************76511111234455555555555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.3E-1374136IPR004333Transcription factor, SBP-box
PROSITE profilePS5114111.00775154IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.66E-777144IPR004333Transcription factor, SBP-box
PfamPF031101.9E-2078160IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MVFPGDSGKH DWPIMSYGEQ FLWLQEGSGT ADGASKRDRS AGGSNVERGE KRAAEPSQAQ  60
GAPRKKATPG PRVKNRICQV VGCDIEYSST HECRARACQT HCSALSVRLE GQDPEQQFRF  120
CYQCHKFHEL DAFRNPDGTL RPRHNCYQSQ ALRLDRRKKK DAAAKASKKN LDIVAVLEAQ  180
SGQIIDAVNL ARASNAAASN LILANVMEVA KATQQTIANV QQRPGSHPSQ QLPHTTKPAA  240
AATAFAPAVS SFNPGFSASS SGAERRVPGD HPSGPSLGNP ASPLDITAID DKRHQRTMHV  300
MGDAAGATRF EELAHVPPEE TLQGRDGGEF SPDLLHSLLS YPKP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155160RRKKKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0015750.0CP001575.1 Micromonas sp. RCC299 chromosome 8, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002507948.10.0predicted protein
TrEMBLC1FG730.0C1FG73_MICCC; Uncharacterized protein
STRINGXP_002507948.10.0(Micromonas sp. RCC299)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53160.22e-06squamosa promoter binding protein-like 4
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]