PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 105915
Common NameMICPUN_105915
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family MYB_related
Protein Properties Length: 669aa    MW: 64896.1 Da    PI: 10.3
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
105915genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.4e-1699143147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r rWT+eE+e +++a k++G   Wk+I +++g ++++ q++s+ qk+
           105915  99 RERWTEEEHEGFLEALKLHGRA-WKKIEEHIG-TKSAVQIRSHAQKF 143
                      78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.77E-1693149IPR009057Homeodomain-like
PROSITE profilePS5129420.60994148IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-896145IPR009057Homeodomain-like
TIGRFAMsTIGR015575.7E-1597146IPR006447Myb domain, plants
SMARTSM007177.5E-1298146IPR001005SANT/Myb domain
PfamPF002493.7E-1399142IPR001005SANT/Myb domain
CDDcd001673.28E-9101144No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 669 aa     Download sequence    Send to blast
MSGSQPPWPG FGQVPGGVNP WLGFAPGLNP ASAGDGASLA VGNNAVPVPG AGGPLSGGAF  60
DFALDRAAAQ RALAASASAG GGAAPSSKVR KPYTITKQRE RWTEEEHEGF LEALKLHGRA  120
WKKIEEHIGT KSAVQIRSHA QKFFSKLQRE AQKSGTVDRA GNGDGPSESE STVTVIPPAR  180
PKRKPAHPYP RKAPDPGVHP THSGGIANGA GASMNALKGT FGGVANGGDS NVAAAAAAAF  240
MMAMGNGTAG FGAVDPAAAA AAWPTAASGF PSPLGAPGNL GNAHGGAHGA HAGNPYANAL  300
HSQMLALAQV NPAALALLGA RPQQTQQQQQ QQQQQQAAAA QANAARAQQQ FMAALAMIGG  360
GGGGGGAQQQ PPRVPPAAAP AAPAARQTPG PAPNIFSAML NAVAAGNTAA GAPNAAAPSL  420
SDTAAFANWA AAMGAATNGS AGGLAAANGA AEGEAGPNTA VAGGNADQMA ALANVMMFFP  480
GIPGGAGAGA GAGAGAAVAP PAPAAANGSG GGQQTHSGTG TGTNQTVSEN TGRDDATTKE  540
NRAERKSALE KRKRGGSARD ASDKGGDTAV GDGGREEPRG KRVNSVVAPA IASKGNTAVD  600
EGPHKTSGSG GSGSGGGSGG GSGSSAQTGR RAAQQGFESS SQRENSPNSE KGPNSDKGSD  660
KGDAGVEA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1611621SGSGGGSGGGS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00146DAPTransfer from AT1G18330Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0015750.0CP001575.1 Micromonas sp. RCC299 chromosome 8, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002507825.10.0predicted protein
TrEMBLC1FFH00.0C1FFH0_MICCC; Uncharacterized protein
STRINGXP_002507825.10.0(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP4541427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01060.44e-32MYB_related family protein
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]