PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantTFDB

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Binding Motif |

Orthologous Group |

Basic Information? help Back to Top

TF ID

105585

Common Name

MICPUN_105585

Organism

Micromonas sp. RCC299

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas

Family

Protein Properties

Length: 289aa MW: 30364.9 Da PI: 9.6054

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
105585	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	60	3.1e-19	154	187	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C+nC+t+kTplWR+gp g+ktLCnaCG+++++ + 105585 154 CANCRTSKTPLWRNGPLGPKTLCNACGVRFKLGK 187 *******************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50114	14.615	148	191	IPR000679	Zinc finger, GATA-type
SMART	SM00401	1.4E-12	148	210	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	2.19E-13	150	191	No hit	No description
Gene3D	G3DSA:3.30.50.10	1.7E-16	152	190	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	2.06E-15	153	185	No hit	No description
Pfam	PF00320	1.2E-16	154	187	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	154	179	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0007623	Biological Process	circadian rhythm
GO:0009416	Biological Process	response to light stimulus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MATSGQQPPE AAHAPPQSAA QAQANAYHEQ MKANYAAAYA ANPYLLHPQI MAMNAFASAA 60 NPHPPNLVEV QTLLKRYEHM TQGMQKVPSL KELNARAPPY APPGVADAAH INALPPAVKV 120 PPAVAAPNEE PNAVAGAGEE DAEGMPAPCA GKVCANCRTS KTPLWRNGPL GPKTLCNACG 180 VRFKLGKLPP PGGWPPGHVP PPAPPRKRPA LLDSNGQPVK RSKAEKGALL EKDGEKVKKK 240 RRPRLAPDLE AEEGGEYLRA GKVAKTTALL TDYDGAVLLM VLAGMYSH*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	235	243	KVKKKRRPR
2	237	241	KKKRR
3	237	242	KKKRRP

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00530	DAP	Transfer from AT5G25830	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP001326	0.0	CP001326.1 Micromonas sp. RCC299 chromosome 5, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002502132.1	0.0	predicted protein
TrEMBL	C1E699	0.0	C1E699_MICCC; Uncharacterized protein
STRING	XP_002502132.1	0.0	(Micromonas sp. RCC299)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP4369	10	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36620.1	7e-14	GATA transcription factor 19

Link Out ? help Back to Top
Phytozome	105585
Entrez Gene	8243802

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]