PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 105391
Common NameMICPUN_105391
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family MYB_related
Protein Properties Length: 294aa    MW: 31828.8 Da    PI: 9.1955
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
105391genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.46.6e-13164208347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + +++G+g+W++I+r +   Rt+ q+ s+ qky
           105391 164 PWTEEEHRLFLLGLAKFGKGDWRSISRNFVISRTPTQVASHAQKY 208
                      7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00717233285IPR001005SANT/Myb domain
SuperFamilySSF466891.52E-53493IPR009057Homeodomain-like
PROSITE profilePS500905.5873683IPR017877Myb-like domain
PROSITE profilePS5129417.402156213IPR017930Myb domain
SuperFamilySSF466891.45E-16159214IPR009057Homeodomain-like
SMARTSM007175.2E-11161211IPR001005SANT/Myb domain
TIGRFAMsTIGR015578.3E-17161211IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.603.0E-11162207IPR009057Homeodomain-like
PfamPF002492.5E-11164208IPR001005SANT/Myb domain
CDDcd001672.41E-10164209No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MTTMDPFPNF SLDGLGLELG RGSMGGIDSV IPYEHWTVDE DKHFETSLAQ IGDLDSDDMW  60
GQFSAHIPGK SMVGLKRRFN LLQEDIKNIE SGRVPLPHYE NHDGVLNTEG VVAPAKVDTA  120
PVAPAPATQT NSGGSNGSKS SSKKKGGKAP AAKTSDQERR KGIPWTEEEH RLFLLGLAKF  180
GKGDWRSISR NFVISRTPTQ VASHAQKYFI RLNSLNKKDK RRSSIHDITS VNGAGDSAPN  240
SSQNGQPMPT MVPMQPMASG PMSGNGYYGA PMGNSMGYMQ TPGMQTMYVQ QPM*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0013250.0CP001325.1 Micromonas sp. RCC299 chromosome 4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002501238.10.0predicted protein
SwissprotQ9FNN65e-62SRM1_ARATH; Transcription factor SRM1
TrEMBLC1E3520.0C1E352_MICCC; Uncharacterized protein
STRINGXP_002501238.10.0(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP3221529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.11e-48MYB family protein
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]
  2. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  3. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]