PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

102726

Common Name

SELMODRAFT_449740

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

GRAS

Protein Properties

Length: 424aa MW: 47593.6 Da PI: 7.9643

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
102726	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	365.8	5.9e-112	54	422	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svse....lykalppsetseknsseelaalklfsevsPilkfshlta 98 lv+ Ll+cA av+ ++l la+a+L +l+ l+ p+g+pmqRla+y+teAL arl+r + s+ l + + ++ s+ + s+ l a+ +f+e Pi kf+hlt 102726 54 LVRMLLSCAGAVAIDNLDLARAILVQLRALVVPHGSPMQRLASYVTEALVARLSRnTRSShfqgLIADHSLQQLSSATRSDMLEAFWVFYEYIPIGKFTHLTM 156 5789************************************************9533331111344445566666669999999999*********** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEa 201 Nq +lea+++e+++H++Df++ +G+QWp++lq+La Rp+gpp +R+T+vgs s + l+e g++L + A++lgvpfe+ +l +led++ + +++ gEa 102726 157 NQILLEAADRERAIHVVDFQVWYGAQWPSFLQSLAMRPGGPPVVRMTAVGS----SLRDLQEAGSKLLDCARSLGVPFEYCIL-RVELEDFHAGMVELRDGEA 254 ***********************************************....9*********************95.889************ PP GRAS 202 laVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak..lpreseerikvErellgreivnvvaceg 302 + Vn+ q hr+l + d++L+ ++sl+P++vv++e++adhns++F++rf+ +l+yysa+fd+++a+ +p + r+k+E+ + +++++n++aceg 102726 255 VLVNSLCQFHRFL------KRDLDQFLQGLRSLRPRLVVMAENDADHNSPDFMHRFMACLHYYSAVFDAFDASlhMPGTLPGRKKLEELIAAQKLRNMIACEG 351 ********9......334678*****************************************9982245566******************* PP GRAS 303 aerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +er+erhe+++ W++r+e +GF++v++s+ka +qa+lll+ ++sdgy++ +++g l+lgW++ pL v aW 102726 352 SERVERHESMRAWNARMEGVGFRAVSMSHKAINQASLLLKLYYSDGYTLTNQEGFLILGWRGMPLNGVGAW 422 ********************************************************************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	57.682	28	403	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.0E-109	54	422	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence Send to blast
MVALGGGGVS RAGGGDYNSN HHHHLGQQQQ QQQQQRHHSN NFPKFEPVDQ QLRLVRMLLS 60 CAGAVAIDNL DLARAILVQL RALVVPHGSP MQRLASYVTE ALVARLSRNT RSSHFQGLIA 120 DHSLQQLSSA TRSDMLEAFW VFYEYIPIGK FTHLTMNQIL LEAADRERAI HVVDFQVWYG 180 AQWPSFLQSL AMRPGGPPVV RMTAVGSSLR DLQEAGSKLL DCARSLGVPF EYCILRVELE 240 DFHAGMVELR DGEAVLVNSL CQFHRFLKRD LDQFLQGLRS LRPRLVVMAE NDADHNSPDF 300 MHRFMACLHY YSAVFDAFDA SLHMPGTLPG RKKLEELIAA QKLRNMIACE GSERVERHES 360 MRAWNARMEG VGFRAVSMSH KAINQASLLL KLYYSDGYTL TNQEGFLILG WRGMPLNGVG 420 AWI*

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence Send to blast

MVALGGGGVS RAGGGDYNSN HHHHLGQQQQ QQQQQRHHSN NFPKFEPVDQ QLRLVRMLLS  60
CAGAVAIDNL DLARAILVQL RALVVPHGSP MQRLASYVTE ALVARLSRNT RSSHFQGLIA  120
DHSLQQLSSA TRSDMLEAFW VFYEYIPIGK FTHLTMNQIL LEAADRERAI HVVDFQVWYG  180
AQWPSFLQSL AMRPGGPPVV RMTAVGSSLR DLQEAGSKLL DCARSLGVPF EYCILRVELE  240
DFHAGMVELR DGEAVLVNSL CQFHRFLKRD LDQFLQGLRS LRPRLVVMAE NDADHNSPDF  300
MHRFMACLHY YSAVFDAFDA SLHMPGTLPG RKKLEELIAA QKLRNMIACE GSERVERHES  360
MRAWNARMEG VGFRAVSMSH KAINQASLLL KLYYSDGYTL TNQEGFLILG WRGMPLNGVG  420
AWI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	6e-70	61	423	26	379	Protein SCARECROW
5b3h_A	7e-70	61	423	25	378	Protein SCARECROW
5b3h_D	7e-70	61	423	25	378	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002975137.1	0.0	DELLA protein RGL2
TrEMBL	D8RVA3	0.0	D8RVA3_SELML; GRAS family protein
STRING	EFJ23922	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP5366	13	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	1e-81	RGA-like 1

Link Out ? help Back to Top
Phytozome	102726
Entrez Gene	9637827

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]