PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 101260
Common NameMICPUN_101260
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family C2H2
Protein Properties Length: 542aa    MW: 58142.1 Da    PI: 9.2935
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
101260genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00046336358223
              EETTTTEEESSHHHHHHHHHH.T CS
  zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
              +C  Cgk+F ++  L++H+   H
   101260 336 RCLVCGKTFGSHKPLEQHLAAsH 358
              7*****************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.972335363IPR007087Zinc finger, C2H2
PROSITE patternPS000280337358IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MGVPNDDNDG EAWATGQQIA ARLPRLDGVE PDHPVVACGL LVDVAARAGV LAMPSETAVG  60
LNLEGAPMMT RRVDGDEDRF EYSPTAASIL LEYLTEHPEI ARGVCNSAHK APDGDEFRCG  120
KFIRGVSAEA AAAAMAWRKS KLPAEIIKLD SLAEPPNPWK KAESAKHGTE QTEMDASKRE  180
KKQRKEREKK EGKAAEKKPP VVLVPAEAPA VPAWGGSASA KPPPAASMSQ ILKEQSTRTV  240
AKQPHPAASR TPGIIRLPKG GAAPASRPGG GGGWADILRD RPTEGGSTTA WDVQSPDIPS  300
LGLTQRPAPP KLPEVTPERL SAEARKSKVD QFGKVRCLVC GKTFGSHKPL EQHLAASHFG  360
LNSMEAKALE AKLVAAGVHI PGDGSEKTKP DRMAIQFGEI LDQPRSRPGD APIANLATSL  420
AAYIRETPKK KEKRAAAIGA TGRMRHGGQM VMNPNQASSS GLVHRRGKER IDGKKKKPMT  480
KLKKIILSDR AARLEREEKA KNEREMNEKE TGEKEAEDDK EEAVMELEVT VEVARGAENE  540
E*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183190RKEREKKE
2464477RRGKERIDGKKKKP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0013280.0CP001328.1 Micromonas sp. RCC299 chromosome 7, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002503419.10.0predicted protein
TrEMBLC1E9H10.0C1E9H1_MICCC; Uncharacterized protein
STRINGXP_002503419.10.0(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP76555
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]