PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 0300010453 | ||||||||
Common Name | OT_ostta03g04660 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | C3H | ||||||||
Protein Properties | Length: 415aa MW: 45202.6 Da PI: 4.5619 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.5 | 5.5e-09 | 4 | 25 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C+ff+ G C+ G+rC+FaH+ 0300010453 4 ETCKFFLV-GACRNGARCRFAHD 25 88******.*************7 PP | |||||||
2 | zf-CCCH | 24.5 | 4.6e-08 | 42 | 65 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +e+C+ffa C +GdrC++aH+ 0300010453 42 RERCKFFASANGCTFGDRCRYAHD 65 79*********************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.939 | 1 | 27 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.2E-5 | 1 | 26 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.89E-6 | 3 | 25 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.5E-5 | 4 | 26 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-6 | 4 | 25 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.695 | 39 | 67 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0028 | 40 | 66 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-5 | 42 | 67 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.5E-6 | 42 | 65 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-5 | 44 | 66 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:3.30.40.10 | 4.1E-10 | 242 | 319 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
CDD | cd00162 | 1.65E-5 | 254 | 317 | No hit | No description |
SuperFamily | SSF57850 | 3.53E-13 | 254 | 325 | No hit | No description |
SMART | SM00184 | 1.0E-6 | 255 | 316 | IPR001841 | Zinc finger, RING-type |
PROSITE profile | PS50089 | 11.781 | 255 | 317 | IPR001841 | Zinc finger, RING-type |
Pfam | PF00097 | 2.7E-6 | 255 | 316 | IPR018957 | Zinc finger, C3HC4 RING-type |
PROSITE pattern | PS00518 | 0 | 279 | 288 | IPR017907 | Zinc finger, RING-type, conserved site |
PROSITE profile | PS50103 | 13.366 | 346 | 375 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.16 | 347 | 374 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0016874 | Molecular Function | ligase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 415 aa Download sequence Send to blast |
MTHETCKFFL VGACRNGARC RFAHDDGGSD VASARVDGGH SRERCKFFAS ANGCTFGDRC 60 RYAHDDGRGN DRGGGMRANA AAYAPMGGIG TAGGTTGWRG GRGAGRDGAN AGPMDDGEEE 120 WGYVDEHGNW VSFDDEGDGA REFLAAQLPD EDDLLGLTSE TPGEPDGGDA WGFYDENGQF 180 VELSGEAGAY LQTQEHSVPR RAMISRLPRF FDDDWFGTMN DDEAFDNIDD VALEELSIGG 240 DEEDERVAAS ANLECAVCLE VVAQRPRLAD RRFGLLNACD HIFCLGCIRG WRQGGTQRGS 300 EASASSNEQA RMCPICRVTS HFITPATTWP RNADEKKEMT EAYLARMKKI PCRFFDGGDG 360 TCPFGTSCFY EHRYRATGEL EESNVRKSTA ADGSLNIITP VRLSDFLQTS RRLR* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022838594.1 | 0.0 | Putative E3 ubiquitin-protein ligase,makorin-related | ||||
TrEMBL | A0A1Y5I3F4 | 0.0 | A0A1Y5I3F4_OSTTA; Putative makorin RING finger protein | ||||
STRING | A0A090M3L8 | 0.0 | (Ostreococcus tauri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP1918 | 12 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.2 | 3e-41 | C3H family protein |
Publications ? help Back to Top | |||
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