PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 0300010453
Common NameOT_ostta03g04660
Organism
Ostreococcus tauri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family C3H
Protein Properties Length: 415aa    MW: 45202.6 Da    PI: 4.5619
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
0300010453genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.55.5e-09425426
                ---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
                e C+ff+  G C+ G+rC+FaH+
  0300010453  4 ETCKFFLV-GACRNGARCRFAHD 25
                88******.*************7 PP
2zf-CCCH24.54.6e-084265326
                S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                +e+C+ffa    C +GdrC++aH+
  0300010453 42 RERCKFFASANGCTFGDRCRYAHD 65
                79*********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.939127IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-5126IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-6325IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-5426IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-6425IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.6953967IPR000571Zinc finger, CCCH-type
SMARTSM003560.00284066IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-54267IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-64265IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-54466IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.104.1E-10242319IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001621.65E-5254317No hitNo description
SuperFamilySSF578503.53E-13254325No hitNo description
SMARTSM001841.0E-6255316IPR001841Zinc finger, RING-type
PROSITE profilePS5008911.781255317IPR001841Zinc finger, RING-type
PfamPF000972.7E-6255316IPR018957Zinc finger, C3HC4 RING-type
PROSITE patternPS005180279288IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.366346375IPR000571Zinc finger, CCCH-type
SMARTSM003560.16347374IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0016874Molecular Functionligase activity
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MTHETCKFFL VGACRNGARC RFAHDDGGSD VASARVDGGH SRERCKFFAS ANGCTFGDRC  60
RYAHDDGRGN DRGGGMRANA AAYAPMGGIG TAGGTTGWRG GRGAGRDGAN AGPMDDGEEE  120
WGYVDEHGNW VSFDDEGDGA REFLAAQLPD EDDLLGLTSE TPGEPDGGDA WGFYDENGQF  180
VELSGEAGAY LQTQEHSVPR RAMISRLPRF FDDDWFGTMN DDEAFDNIDD VALEELSIGG  240
DEEDERVAAS ANLECAVCLE VVAQRPRLAD RRFGLLNACD HIFCLGCIRG WRQGGTQRGS  300
EASASSNEQA RMCPICRVTS HFITPATTWP RNADEKKEMT EAYLARMKKI PCRFFDGGDG  360
TCPFGTSCFY EHRYRATGEL EESNVRKSTA ADGSLNIITP VRLSDFLQTS RRLR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022838594.10.0Putative E3 ubiquitin-protein ligase,makorin-related
TrEMBLA0A1Y5I3F40.0A0A1Y5I3F4_OSTTA; Putative makorin RING finger protein
STRINGA0A090M3L80.0(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP19181212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.23e-41C3H family protein
Publications ? help Back to Top
  1. Derelle E, et al.
    Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features.
    Proc. Natl. Acad. Sci. U.S.A., 2006. 103(31): p. 11647-52
    [PMID:16868079]