PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 0300010106
Organism
Ostreococcus tauri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family GATA
Protein Properties Length: 295aa    MW: 32217.3 Da    PI: 4.9007
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
0300010106genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.84.8e-16212245134
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                 C +Cg+ ++p+WRrgp  +++LCnaCG +yr+++
  0300010106 212 CDHCGALESPQWRRGPAAKPMLCNACGTRYRRTN 245
                 9******************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.42E-11205249No hitNo description
Gene3DG3DSA:3.30.50.101.8E-11206249IPR013088Zinc finger, NHR/GATA-type
SMARTSM004016.1E-8206259IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.466206261IPR000679Zinc finger, GATA-type
CDDcd002029.26E-12211250No hitNo description
PfamPF003202.2E-13212244IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MLARGRRGKT REECLARDLR RSDSAMTLRQ SQRTGEMGRM GDEGEKVPRE LEKVPRESEW  60
PGARVDVDAD EDWRRSTEES EEVEGDVAVD ASAHAEVESG RRWYTRVRIY DDECSTAVWD  120
AELAKLEASI LSSSDDASVG GVESSRFRRE ERRWAPPADY YEEDEENDGG NFGVAVGVNG  180
AGDARVVSVT STGGVWDTNN ENAVNTKSGG PCDHCGALES PQWRRGPAAK PMLCNACGTR  240
YRRTNNLGPS PLLRAAALGK RKTLSQQSEP NAKPNARCND PGSAKISFGS AMVF*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003078018.20.0Zinc finger, GATA-type
TrEMBLA0A1Y5I6J80.0A0A1Y5I6J8_OSTTA; GATA-4/5/6 transcription factor
STRINGA0A096P7R30.0(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP4501526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.32e-11GATA transcription factor 26