PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 0200010530
Common NameOT_ostta02g02930
Organism
Ostreococcus tauri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family C3H
Protein Properties Length: 402aa    MW: 43959.7 Da    PI: 6.6075
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
0200010530genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.77.2e-07226246425
                 ---SGGGGTS--TTTTT-SS-S CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                 + Crf+++ G C+ Gd C F H
  0200010530 226 KVCRFWLQ-GGCRKGDACDFKH 246
                 68******.************* PP
2zf-CCCH18.53.7e-06255275526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 +Crffar G Ck G rC+F H+
  0200010530 255 RCRFFAR-GRCKAGKRCPFRHD 275
                 7******.***********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003567.3E-4222248IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.098222249IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-7224247IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-5226247IPR000571Zinc finger, CCCH-type
PfamPF156633.1E-8227284No hitNo description
PROSITE profilePS5010315.582250277IPR000571Zinc finger, CCCH-type
SMARTSM003560.0021252276IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-6252275IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4256277IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MTSANPSREA NANPSTSAVT PTVTSYMCVA TSDGDVTWVP HIGPYVPAGA PPGLMHAQSE  60
GRGGRGGGGW ASGTRGRRGG GHRRGREDDP GDAYRGVSTT GDGFNAAKRA RAGVGDEGKA  120
SGTNKPSGTS KPTLPTAEEI PVVKPVDVAS LPEDVRRYRE ERAKHWPSDS HVQAKEILAK  180
QREMGHFEAS QEIGEEGDGE RTATMTTKRE QRVGEQEKKP SGDSVKVCRF WLQGGCRKGD  240
ACDFKHEAGP NSDQRCRFFA RGRCKAGKRC PFRHDIVDKK TSGVSSGNPQ TLLKKLLHKE  300
IKRDEERLLQ LFRFLVNNDF FEGSKGCEEP YWMFPWADED FKVVDRRTAI ASLPPIEDED  360
AEVKEPVTQA MSEEVEKAPR PDMGFFAAYD SEEDSRANDS D*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16268GGRGGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022840779.10.0Zinc finger, CCCH-type
TrEMBLA0A090M7R10.0A0A090M7R1_OSTTA; Zinc finger, CCCH-type
STRINGA0A090M7R10.0(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP578177
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.25e-06C3H family protein
Publications ? help Back to Top
  1. Derelle E, et al.
    Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features.
    Proc. Natl. Acad. Sci. U.S.A., 2006. 103(31): p. 11647-52
    [PMID:16868079]