PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantTFDB

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

0200010427

Common Name

Ot02g04270, OT_ostta02g02260

Organism

Ostreococcus tauri

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus

Family

Protein Properties

Length: 97aa MW: 10978.3 Da PI: 4.4502

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
0200010427	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	31.8	2.4e-10	44	91	9	55
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHH.HHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterq.VkvWFqNrRake 55 +e l++L e++ekn+yp+++e LA++l+ +++q + +FqN R++ 0200010427 44 SEVLDRLTEEYEKNPYPTETELDALARELNAPDSQkIVSFFQNMRIRS 91 67899**********************9988765999****995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00086	2.67E-9	40	91	No hit	No description
SuperFamily	SSF46689	4.19E-8	41	91	IPR009057	Homeodomain-like
Pfam	PF00046	6.4E-8	44	91	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.8E-9	44	90	IPR009057	Homeodomain-like
PROSITE profile	PS50071	9.005	47	94	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 97 aa Download sequence Send to blast
MDPLSPAITF FDKEGKGRTS YIGSLVPEKL FYPTPGLWFT NQGSEVLDRL TEEYEKNPYP 60 TETELDALAR ELNAPDSQKI VSFFQNMRIR SQLSSQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003075030.1	9e-66	Homeobox domain
TrEMBL	Q01EF1	2e-64	Q01EF1_OSTTA; Homeobox domain
STRING	Q01EF1	4e-65	(Ostreococcus tauri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP12965	3	3

Link Out ? help Back to Top
Entrez Gene	9832646

Publications ? help Back to Top
Derelle E, et al. Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features. Proc. Natl. Acad. Sci. U.S.A., 2006. 103(31): p. 11647-52 [PMID:16868079]