![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 0100010593 | ||||||||
Common Name | OT_ostta01g06050 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 132aa MW: 14471.7 Da PI: 11.1471 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.1 | 4.8e-09 | 61 | 111 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 + ++T+eE l ++vk +G+g W++I + +Rt ++k++w++ 0100010593 61 KTKFTPEEVAALRQGVKVYGKGAWAKILQAHHavfdtHKRTQVDLKDKWRN 111 569************************9988888***89***********9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.2E-14 | 53 | 118 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.799 | 56 | 117 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.99E-13 | 58 | 114 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.4E-7 | 60 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-7 | 61 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 2.60E-19 | 63 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 132 aa Download sequence Send to blast |
MPKSSQPAKK RLRSVPVEDD IEDVEVPTAP ASPALGAARP TSPSRTVVVP RPNYAKVRRR 60 KTKFTPEEVA ALRQGVKVYG KGAWAKILQA HHAVFDTHKR TQVDLKDKWR NIENKEAKAV 120 MIALANSAAR A* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 57 | 62 | RRRKTK |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003074656.2 | 4e-86 | SANT/Myb domain | ||||
TrEMBL | A0A090LYC0 | 1e-84 | A0A090LYC0_OSTTA; SANT/Myb domain | ||||
TrEMBL | A0A1Y5I2I6 | 4e-89 | A0A1Y5I2I6_OSTTA; Uncharacterized protein | ||||
STRING | A0A090LYC0 | 2e-85 | (Ostreococcus tauri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP6506 | 6 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G58340.2 | 5e-12 | MYB_related family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|