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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Phylogenetic Tree for
Castanea mollissima
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/------------------------------------------------------------------ augustus_masked-scaffold07258-abinit-gene-0.0-mRNA-1/4-26 (1) | |------------------------------------------------------------------ maker-scaffold00298-augustus-gene-1.15-mRNA-1/226-248 (7) | |------------------------------------------------------------------ maker-scaffold04558-snap-gene-0.13-mRNA-1/75-99 (9) | |------------------------------------------------------------------ maker-scaffold00219-augustus-gene-1.12-mRNA-1/131-153 (16) | |------------------------------------------------------------------ augustus_masked-scaffold03263-abinit-gene-0.0-mRNA-1/233-255 (22) | |------------------------------------------------------------------ augustus_masked-scaffold17325-abinit-gene-0.0-mRNA-1/100-122 (23) | |------------------------------------------------------------------ augustus_masked-scaffold00248-abinit-gene-1.4-mRNA-1/129-151 (27) | |------------------------------------------------------------------ augustus_masked-scaffold00231-abinit-gene-1.6-mRNA-1/38-60 (28) | |------------------------------------------------------------------ augustus_masked-scaffold08432-abinit-gene-0.1-mRNA-1/61-83 (34) | |------------------------------------------------------------------ maker-scaffold00298-augustus-gene-1.15-mRNA-1/264-286 (35) | |------------------------------------------------------------------ maker-scaffold00547-snap-gene-0.28-mRNA-1/1341-1364 (37) | |------------------------------------------------------------------ maker-scaffold02946-augustus-gene-0.17-mRNA-1/187-211 (38) | |------------------------------------------------------------------ maker-scaffold04558-snap-gene-0.13-mRNA-1/213-237 (49) | |------------------------------------------------------------------ maker-scaffold00133-augustus-gene-1.20-mRNA-1/305-326 (50) | |------------------------------------------------------------------ maker-scaffold27733-snap-gene-0.3-mRNA-1/87-111 (52) | |------------------------------------------------------------------ maker-scaffold01165-augustus-gene-0.28-mRNA-1/217-238 (64) | |------------------------------------------------------------------ maker-scaffold01717-augustus-gene-0.29-mRNA-1/43-65 (65) | |------------------------------------------------------------------ augustus_masked-scaffold02344-abinit-gene-0.5-mRNA-1/47-69 (71) | |------------------------------------------------------------------ snap_masked-scaffold06969-abinit-gene-0.6-mRNA-1/6-31 (74) | |------------------------------------------------------------------ augustus_masked-scaffold00507-abinit-gene-0.0-mRNA-1/102-124 (77) | |------------------------------------------------------------------ maker-scaffold03184-snap-gene-0.22-mRNA-1/164-185 (78) | |------------------------------------------------------------------ maker-scaffold03184-snap-gene-0.22-mRNA-1/262-278 (85) | |------------------------------------------------------------------ maker-scaffold04558-snap-gene-0.13-mRNA-1/104-129 (88) | |------------------------------------------------------------------ augustus_masked-scaffold07426-abinit-gene-0.0-mRNA-1/55-77 (90) | |------------------------------------------------------------------ augustus_masked-scaffold04899-abinit-gene-0.3-mRNA-1/124-146 (92) | |------------------------------------------------------------------ augustus_masked-scaffold01335-abinit-gene-0.13-mRNA-1/87-108 (94) | |------------------------------------------------------------------ maker-scaffold00133-augustus-gene-1.20-mRNA-1/615-633 (100) | |------------------------------------------------------------------ snap_masked-scaffold00318-abinit-gene-0.23-mRNA-1/747-772 (120) | |------------------------------------------------------------------ augustus_masked-scaffold01335-abinit-gene-0.13-mRNA-1/117-137 (140) | |------------------------------------------------------------------ maker-scaffold05230-augustus-gene-0.10-mRNA-1/39-61 (110) | | /---------------------- augustus_masked-scaffold00105-abinit-gene-1.2-mRNA-1/28-50 (42) | | |---------------------99--------------------+ /----------- augustus_masked-scaffold00231-abinit-gene-1.4-mRNA-1/31-53 (82) | \----58----+ | \----------- augustus_masked-scaffold00787-abinit-gene-0.6-mRNA-1/32-54 (95) | | /--------------------------------- maker-scaffold00417-augustus-gene-0.26-mRNA-1/201-223 (4) | | | | /----------- maker-scaffold00998-augustus-gene-0.28-mRNA-1/264-286 (8) | /----82----+ /----60----+ | | | | \----------- maker-scaffold11775-augustus-gene-0.2-mRNA-1/240-262 (58) | | | | | | \----53----+---------------------- maker-scaffold03936-augustus-gene-0.15-mRNA-1/299-321 (30) | /----51----+ | | | | \---------------------- maker-scaffold00371-augustus-gene-0.25-mRNA-1/264-286 (75) | | | | | \-------------------------------------------- augustus_masked-scaffold03263-abinit-gene-0.0-mRNA-1/328-351 (89) | | | | /--------------------------------- maker-scaffold09384-augustus-gene-0.5-mRNA-1/171-193 (6) | | | | | |--------------------------------- maker-scaffold01152-snap-gene-0.16-mRNA-1/171-193 (12) | | | |----99----+ | /----------- maker-scaffold00227-augustus-gene-1.20-mRNA-1/145-167 (17) | | |----------98---------+ | | | \----------- augustus_masked-scaffold05631-abinit-gene-0.6-mRNA-1/133-155 (91) | | | | | | /----------- snap_masked-scaffold12617-abinit-gene-0.3-mRNA-1/106-128 (25) | | | /----55----+ | | | | \----------- maker-scaffold04058-augustus-gene-0.21-mRNA-1/137-159 (93) | | |----57----+ | \----------93---------+ \---------------------- maker-scaffold06881-snap-gene-0.13-mRNA-1/157-179 (44) | | | |--------------------------------- augustus_masked-scaffold07999-abinit-gene-0.0-mRNA-1/151-173 (43) | | | |--------------------------------- maker-scaffold00235-augustus-gene-0.30-mRNA-1/82-104 (48) | | | |--------------------------------- maker-scaffold01705-snap-gene-0.24-mRNA-1/155-177 (53) | | | |--------------------------------- maker-scaffold05305-snap-gene-0.19-mRNA-1/142-164 (63) | | | |--------------------------------- maker-scaffold01152-snap-gene-0.15-mRNA-1/97-119 (96) | | | \--------------------------------- maker-scaffold05469-augustus-gene-0.6-mRNA-1/137-159 (150) | | /----------- maker-scaffold27733-snap-gene-0.3-mRNA-1/57-81 (40) |--------------------------95--------------------------+ | \----------- maker-scaffold27733-snap-gene-0.3-mRNA-1/30-52 (110) | | /---------------------- augustus_masked-scaffold18135-abinit-gene-0.0-mRNA-1/37-59 (14) | | + |---------------------- augustus_masked-scaffold02769-abinit-gene-0.7-mRNA-1/41-63 (18) | | | |---------------------- augustus_masked-scaffold10814-abinit-gene-0.2-mRNA-1/41-63 (29) | | | |---------------------- augustus_masked-scaffold03263-abinit-gene-0.2-mRNA-1/119-141 (33) | | | |---------------------- augustus_masked-scaffold07258-abinit-gene-0.0-mRNA-1/281-303 (62) |---------------------93--------------------+ | | /----------- augustus_masked-scaffold00932-abinit-gene-0.15-mRNA-1/40-62 (67) | | | | |----87----+----------- augustus_masked-scaffold02748-abinit-gene-0.4-mRNA-1/38-60 (72) | | | | | \----------- augustus_masked-scaffold04736-abinit-gene-0.0-mRNA-1/40-62 (97) | | | | /----------- augustus_masked-scaffold03601-abinit-gene-0.6-mRNA-1/85-107 (160) | \----68----+ | \----------- augustus_masked-scaffold05196-abinit-gene-0.2-mRNA-1/96-118 (180) | | /----------- snap_masked-scaffold00318-abinit-gene-0.23-mRNA-1/830-856 (24) |--------------------------92--------------------------+ | \----------- maker-scaffold00547-snap-gene-0.28-mRNA-1/1400-1426 (79) | | /----------- maker-scaffold01152-snap-gene-0.16-mRNA-1/95-117 (10) | /----99----+ | | \----------- maker-scaffold01152-snap-gene-0.15-mRNA-1/21-43 (45) | /----53----+ | | \---------------------- maker-scaffold09384-augustus-gene-0.5-mRNA-1/95-117 (20) | | | |--------------------------------- maker-scaffold05469-augustus-gene-0.6-mRNA-1/61-83 (19) | | | |--------------------------------- snap_masked-scaffold12617-abinit-gene-0.3-mRNA-1/32-52 (26) | | | | /----------- augustus_masked-scaffold05631-abinit-gene-0.6-mRNA-1/56-78 (41) | |----------97---------+ | | \----------- maker-scaffold00227-augustus-gene-1.20-mRNA-1/68-90 (69) | | |---------------90---------------+--------------------------------- maker-scaffold04058-augustus-gene-0.21-mRNA-1/61-83 (80) | | | |--------------------------------- augustus_masked-scaffold07999-abinit-gene-0.0-mRNA-1/75-97 (81) | | | |--------------------------------- maker-scaffold06881-snap-gene-0.13-mRNA-1/83-103 (84) | | | |--------------------------------- maker-scaffold00235-augustus-gene-0.30-mRNA-1/6-28 (87) | | | |--------------------------------- maker-scaffold05305-snap-gene-0.19-mRNA-1/66-88 (99) | | | \--------------------------------- maker-scaffold01705-snap-gene-0.24-mRNA-1/79-101 (113) | | /----------- augustus_masked-scaffold07258-abinit-gene-0.0-mRNA-1/336-358 (61) | /----66----+ | | \----------- augustus_masked-scaffold02688-abinit-gene-0.2-mRNA-1/474-496 (98) |---------------------81--------------------+ | \---------------------- augustus_masked-scaffold00143-abinit-gene-1.2-mRNA-1/477-499 (111) | | /---------------------- augustus_masked-scaffold06766-abinit-gene-0.1-mRNA-1/156-179 (3) | | | /----100---+ /----------- maker-scaffold04652-augustus-gene-0.16-mRNA-1/174-196 (15) | | \----95----+ |---------------80---------------+ \----------- maker-scaffold03897-snap-gene-0.19-mRNA-1/196-218 (59) | | | \--------------------------------- maker-scaffold04558-snap-gene-0.13-mRNA-1/48-69 (51) | | /----------- augustus_masked-scaffold05234-abinit-gene-0.6-mRNA-1/151-174 (36) |--------------------------78--------------------------+ | \----------- augustus_masked-scaffold06954-abinit-gene-0.0-mRNA-1/135-158 (54) | | /----------- augustus_masked-scaffold12659-abinit-gene-0.0-mRNA-1/10-34 (11) | /----100---+ | | \----------- maker-scaffold27733-snap-gene-0.3-mRNA-1/117-141 (86) |---------------------75--------------------+ | | /----------- maker-scaffold27733-snap-gene-0.3-mRNA-1/180-205 (47) | \----100---+ | \----------- augustus_masked-scaffold12659-abinit-gene-0.0-mRNA-1/73-98 (112) | | /----------- augustus_masked-scaffold10814-abinit-gene-0.2-mRNA-1/89-111 (31) | | | |----------- maker-scaffold07035-snap-gene-0.14-mRNA-1/215-237 (55) | /----75----+ | | |----------- augustus_masked-scaffold02159-abinit-gene-0.0-mRNA-1/90-112 (66) | | | | /----98----+ \----------- augustus_masked-scaffold17033-abinit-gene-0.0-mRNA-1/90-112 (70) | | | | | \---------------------- augustus_masked-scaffold04736-abinit-gene-0.0-mRNA-1/86-108 (130) |---------------72---------------+ | |--------------------------------- augustus_masked-scaffold02769-abinit-gene-0.7-mRNA-1/114-136 (39) | | | \--------------------------------- maker-scaffold00501-snap-gene-1.8-mRNA-1/204-226 (60) | | /----------- augustus_masked-scaffold06199-abinit-gene-0.2-mRNA-1/78-100 (2) |--------------------------64--------------------------+ | \----------- augustus_masked-scaffold01057-abinit-gene-0.5-mRNA-1/91-113 (170) | | /----------- augustus_masked-scaffold02747-abinit-gene-0.0-mRNA-1/106-128 (46) |--------------------------64--------------------------+ | \----------- augustus_masked-scaffold11284-abinit-gene-0.0-mRNA-1/94-116 (83) | | /----------- augustus_masked-scaffold04973-abinit-gene-0.0-mRNA-1/56-78 (56) |--------------------------57--------------------------+ | \----------- snap_masked-scaffold02177-abinit-gene-0.9-mRNA-1/69-91 (68) | | /---------------------- maker-scaffold00371-augustus-gene-0.25-mRNA-1/180-199 (5) | | | | /----------- maker-scaffold01451-snap-gene-0.32-mRNA-1/115-134 (21) | /----54----+----98----+ | | | \----------- maker-scaffold02174-snap-gene-0.23-mRNA-1/116-133 (190) | | | | | \---------------------- maker-scaffold00998-augustus-gene-0.28-mRNA-1/180-199 (73) | /----85----+ | | |--------------------------------- maker-scaffold11775-augustus-gene-0.2-mRNA-1/156-175 (32) | | | \----------54---------+ \--------------------------------- maker-scaffold00417-augustus-gene-0.26-mRNA-1/116-135 (76) | | /----------- maker-scaffold02883-augustus-gene-0.26-mRNA-1/282-305 (13) \---------------99---------------+ \----------- maker-scaffold15072-augustus-gene-0.5-mRNA-1/299-322 (57) |