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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Phylogenetic Tree for OGEM400
Phylogenetic tree for protein ? help Back to Top |
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Subtree rooted at node 272: /-------------------- Bostr.0556s0555.1.p [Boechera stricta] (4) | | /----- Csa06g011390.1 [Camelina sativa] (9) | /-100+ /-62-+ | \----- Csa04g018350.1 [Camelina sativa] (13) | | /-100+ | | | \---------- Csa09g022510.1 [Camelina sativa] (43) | \-50-+ | | /----- Cagra.27691s0001.1.p [Capsella grandiflora] (62) /-------63------+ \---100---+ | | \----- Carubv10017737m [Capsella rubella] (89) | | | | /----- AT3G29035.1 [Arabidopsis thaliana] (34) | \---------98--------+ | \----- 484673 [Arabidopsis lyrata] (61) | | /----- RrC7533_p1 [Raphanus raphanistrum] (12) | /---100---+ | | \----- Rsa1.0_00387.1_g00044.1 [Raphanus sativus] (152) | | | /-100+ /----- XP_009151811.1 [Brassica rapa] (36) | | | /-100+ | | | | \----- GSBRNA2T00144521001 [Brassica napus] (72) | | \-100+ | /-100+ | /----- XP_013595617.1 [Brassica oleracea] (60) | | | \-100+ /-59-+ | | \----- GSBRNA2T00142881001 [Brassica napus] (84) | | | | | | | \-------------------- 676759600 [Sisymbrium irio] (67) | | | | | | /----- GSBRNA2T00051194001 [Brassica napus] (23) | | | /-100+ | | | | \----- XP_013609231.1 [Brassica oleracea] (158) | | /-100+ /-100+ | | | | | | /----- XP_009111778.1 [Brassica rapa] (69) | | | | | \-100+ | | | |---100---+ \----- GSBRNA2T00009829001 [Brassica napus] (93) /----57---+ | | | | | | | | | | /----- Rsa1.0_00568.1_g00009.1 [Raphanus sativus] (74) | | | /-100-+ | \---100---+ | | | | | | \----- RrC3365_p1 [Raphanus raphanistrum] (110) | | | | | | | | | | | \------------------------- Tp2g17680 [Thellungiella parvula] (58) | | \-72-+ | | | | \------------------------------ Thhalv10004583m [Eutrema salsugineum] (81) | | | | | \------------------------------------ KFK33777.1 [Arabis alpina] (156) | | | \---------------------------------------------- AA53G01090 [Aethionema arabicum] (159) | | /----- XP_013613533.1 [Brassica oleracea] (16) | /-99-+ | | \----- GSBRNA2T00044895001 [Brassica napus] (40) | /-100+ | | | /----- GSBRNA2T00114310001 [Brassica napus] (123) | | \-100+ | /-100+ \----- XP_009139909.1 [Brassica rapa] (162) | | | | | | /----- RrC3174_p1 [Raphanus raphanistrum] (127) | /-73-+ \---100---+ | | | \----- Rsa1.0_01302.1_g00005.1 [Raphanus sativus] (151) | | | | | \-------------------- 676775128 [Sisymbrium irio] (164) | | | | /----- GSBRNA2T00063201001 [Brassica napus] (21) /-55-+ | /-100+ | | /-58-+ | \----- XP_013590191.1 [Brassica oleracea] (73) | | | |------100-----+ | | | | | /----- GSBRNA2T00098528001 [Brassica napus] (94) | | | | \-100+ | | /--64-+ | \----- XP_009125108.1 [Brassica rapa] (116) | | | | | | | | | \------------------------- Tp7g02380 [Thellungiella parvula] (124) | | /-99-+ | | | | | \------------------------------ Thhalv10027874m [Eutrema salsugineum] (95) | | | | | | | \------------------------------------ Thhalv10027479m [Eutrema salsugineum] (141) | | | | | | /----- Araha.25334s0001.1.p [Arabidopsis halleri] (29) | | | /-100+ | | /-82-+ | \----- 494028 [Arabidopsis lyrata] (111) | | | | /------100-----+ | | | | | \---------- AT5G39610.1 [Arabidopsis thaliana] (133) --54-+ | | | | | | | | | /----- Csa11g055650.1 [Camelina sativa] (64) | | | | | /-78-+ | | | | | | \----- Csa10g046940.1 [Camelina sativa] (174) | | | \-------89------+ /-100+ | | /-99-+ | | \---------- Csa12g081820.1 [Camelina sativa] (155) | | | | | /-85-+ | | | | | | | /----- Carubv10005201m [Capsella rubella] (112) | | | | | | \---100---+ | | | | \-88-+ \----- Cagra.6981s0001.1.p [Capsella grandiflora] (157) | \-91-+ | | | | | \-------------------- Bostr.10058s0039.1.p [Boechera stricta] (76) | | | | | \---------------------------------------------- KFK33194.1 [Arabis alpina] (170) | | | \--------------------------------------------------- AA9G00035 [Aethionema arabicum] (144) | | /----- XP_010552836.1 [Tarenaya hassleriana] (125) \--------------------------100--------------------------+ \----- XP_010528353.1 [Tarenaya hassleriana] (168) Subtree rooted at node 304: /-------------------- Bostr.13129s0198.1.p [Boechera stricta] (2) | | /---------- Csa08g056700.1 [Camelina sativa] (8) | | /-100+ /-100+ /----- Csa20g010110.1 [Camelina sativa] (27) | | | | | | | | \-70-+----- Csa13g009710.1 [Camelina sativa] (79) | | | | | \-99-+ \----- Csa08g056710.1 [Camelina sativa] (150) | | | | /----- Cagra.2925s0018.1.p [Capsella grandiflora] (31) /-99-+ \---100---+ | | \----- Carubv10001372m [Capsella rubella] (96) | | | | /----- Araha.0070s0003.1.p [Arabidopsis halleri] (14) | | /-100+ | | | \----- 487602 [Arabidopsis lyrata] (26) | \------100-----+ | \---------- AT5G07680.1 [Arabidopsis thaliana] (53) | | /----- XP_009122319.1 [Brassica rapa] (19) | /-100+ | | \----- GSBRNA2T00042526001 [Brassica napus] (83) | /-97-+ | | | /----- GSBRNA2T00093660001 [Brassica napus] (98) | | \-100+ | | \----- XP_013610035.1 [Brassica oleracea] (154) | | | | /----- RrC554_p6 [Raphanus raphanistrum] (65) /----63----+ | /-100+ | | | | \----- Rsa1.0_00492.1_g00005.1 [Raphanus sativus] (92) | | | | | | | | /----- GSBRNA2T00071676001 [Brassica napus] (71) | | /-63-+-66-+-100+ | | | | | \----- XP_009125699.1 [Brassica rapa] (190) | | | | | | | | | | /----- XP_013618671.1 [Brassica oleracea] (99) | | | | \-87-+ | | | | \----- GSBRNA2T00078555001 [Brassica napus] (120) | |----63---+ | | | | |--------------- 676744338 [Sisymbrium irio] (180) | | | | | | | \--------------- Tp6g35220 [Thellungiella parvula] (161) | | | | | \-------------------- Thhalv10014081m [Eutrema salsugineum] (28) | | | \------------------------------ KFK25161.1 [Arabis alpina] (47) | | /----- AT1G76420.1 [Arabidopsis thaliana] (3) | /---100---+ | | \----- 476799 [Arabidopsis lyrata] (160) | | | /-54-+ /---------- Csa09g081150.1 [Camelina sativa] (15) | | | | | | \-100+ /----- Csa07g047980.1 [Camelina sativa] (136) | | \-100+ | | \----- Csa16g040560.1 [Camelina sativa] (150) | /-100+ | | | /----- Cagra.0799s0114.1.p [Capsella grandiflora] (48) | | |------100-----+ | | | \----- Carubv10022061m [Capsella rubella] (130) | | | | | \-------------------- Bostr.20129s0079.1.p [Boechera stricta] (163) | | | |------------------------- Tp5g31580 [Thellungiella parvula] (6) | | | | /----- XP_009106303.1 [Brassica rapa] (7) | | /-90-+ | | | \----- GSBRNA2T00146607001 [Brassica napus] (11) | | /-81-+ | | | | /----- GSBRNA2T00147768001 [Brassica napus] (114) | | | \-99-+ | |----80---+ \----- XP_013588851.1 [Brassica oleracea] (115) | | | | | | /----- Rsa1.0_07698.1_g00001.1 [Raphanus sativus] (37) | | \---100---+ | | \----- RrC5017_p2 [Raphanus raphanistrum] (113) | | | | /----- XP_010539771.1 [Tarenaya hassleriana] (10) | |---------86--------+ | /-60-+ \----- XP_010537223.1 [Tarenaya hassleriana] (170) | | | | | |------------------------- KFK42062.1 [Arabis alpina] (18) | | | | | | /----- XP_013619595.1 [Brassica oleracea] (39) | | | /-100+ | | | | \----- GSBRNA2T00012468001 [Brassica napus] (90) | | | /-100+ | | | | | /----- XP_009128177.1 [Brassica rapa] (129) | | | | \-100+ | | |----85---+ \----- GSBRNA2T00083095001 [Brassica napus] (148) | | | | | | | | /----- RrC9089_p1 [Raphanus raphanistrum] (78) | | | \---100---+ | | | \----- Rsa1.0_02385.1_g00001.1 [Raphanus sativus] (145) | | | | | |------------------------- Csa09g081160.1 [Camelina sativa] (42) | | | | | |------------------------- Thhalv10019493m [Eutrema salsugineum] (44) | | | | | |------------------------- AA31G00322 [Aethionema arabicum] (117) | /--55-+ | | | | \------------------------- 676741388 [Sisymbrium irio] (166) | | | | | | /----- Neem_29819_f_1 [Azadirachta indica] (20) | | | /-100+ | | | | \----- Neem_7002_f_4 [Azadirachta indica] (68) | | | /----66---+ | | | | | /----- orange1.1g016283m [Citrus sinensis] (35) | | | | \-100+ | | | | \----- Ciclev10001403m [Citrus clementina] (142) | | | | | | | | /----- EcC003993.10 [Eucalyptus camaldulensis] (30) /-100+ | | |------100-----+ | | | | | \----- Eucgr.F03588.1.p [Eucalyptus grandis] (82) | | | | | | | | | | /----- Gorai.002G113300.1 [Gossypium raimondii] (63) | | | | | /-100+ | | | | | | \----- Gh_D01G0847 [Gossypium hirsutum] (85) | |-56-+ | | /-100+ | | | | | | | /----- Gh_A01G0819 [Gossypium hirsutum] (70) | | | \----59---+ | \-100+ | | | | | \----- Cotton_A_12683_BGI-A2_v1.0 [Gossypium arboreum] (169) | | | |-66-+ | | | | | /----- Cotton_A_04612_BGI-A2_v1.0 [Gossypium arboreum] (88) | | | | | /-100+ | | | | | | \----- Gh_A05G1526 [Gossypium hirsutum] (140) | | | | \-100+ | | | | | /----- Gorai.009G186000.1 [Gossypium raimondii] (135) | | | | \-100+ | | | | \----- Gh_D05G1697 [Gossypium hirsutum] (147) | | | | | | | |-------------------- evm.model.supercontig_286.12 [Carica papaya] (143) | | | | | | | \-------------------- Thecc1EG034835t1 [Theobroma cacao] (149) | | | | | \------------------------------------ EcC052965.10 [Eucalyptus camaldulensis] (153) | | | |----------------------------------------- (272) | | | | /---------- XP_010546158.1 [Tarenaya hassleriana] (24) | | | | |--------------97--------------+ /----- XP_010523106.1 [Tarenaya hassleriana] (54) | | \-78-+ | | \----- XP_010547773.1 [Tarenaya hassleriana] (165) | | | | /----- Ciclev10012093m [Citrus clementina] (25) | | /-100+ | | | \----- orange1.1g018950m [Citrus sinensis] (139) | | /------100-----+ | | | | /----- Neem_35472_f_1 [Azadirachta indica] (38) | | | \-100+ | | | \----- Neem_3103_f_14 [Azadirachta indica] (52) | | | | | | /----- Gh_A11G0633 [Gossypium hirsutum] (56) | | | /-93-+ /-100+ |-------84------+ | \----- Cotton_A_15474_BGI-A2_v1.0 [Gossypium arboreum] (80) | | | | /-100+ | | | | | | /----- Gh_D11G0743 [Gossypium hirsutum] (172) | | | | | \-97-+ | | | | /-89-+ \----- Gorai.007G079900.1 [Gossypium raimondii] (173) | | | | | | | | | \-84-+ \--------------- Thecc1EG018621t1 [Theobroma cacao] (167) | | | | | | | \-------------------- evm.model.supercontig_14.101 [Carica papaya] (100) | | | | | | /----- Eucgr.I01958.1.p [Eucalyptus grandis] (41) | | |----------------100----------------+ | | | \----- EcC022004.10 [Eucalyptus camaldulensis] (140) | | | | | | /----- orange1.1g017827m [Citrus sinensis] (45) | | | /-100+ | | | | \----- Ciclev10020480m [Citrus clementina] (118) | | | /---100---+ | | | | | /----- Neem_34778_f_1 [Azadirachta indica] (55) | | | | \-100+ | | | | \----- Neem_12856_f_1 [Azadirachta indica] (131) | | | | /-54-+ | | | /----- Cotton_A_13395_BGI-A2_v1.0 [Gossypium arboreum] (86) | | | |---------97---------+ /-95-+ | | | | | | \----- Gh_A12G1620 [Gossypium hirsutum] (132) | | | | | /-100+ | | | | | | | /----- Gh_D12G1761 [Gossypium hirsutum] (97) | | | | | | \-100+ | | | | \-100+ \----- Gorai.008G194400.1 [Gossypium raimondii] (120) | | | | | | | | | \--------------- Thecc1EG014073t1 [Theobroma cacao] (122) | | | | | | | |----------------------------------------- Eucgr.B00529.1.p [Eucalyptus grandis] (50) | | | | | | | |----------------------------------------- AA44G00040 [Aethionema arabicum] (59) | | | | | | | |----------------------------------------- evm.model.supercontig_111.22 [Carica papaya] (77) | | | | | | | |----------------------------------------- EcC037763.10 [Eucalyptus camaldulensis] (134) | | | | /-83-+ | | \----------------------------------------- XP_010528773.1 [Tarenaya hassleriana] (171) | | | | | | | \---------------------------------------------- AA5G00148 [Aethionema arabicum] (17) | | | | | \--------------------------------------------------- KFK27900.1 [Arabis alpina] (33) | | | | /----- Csa02g068390.1 [Camelina sativa] (46) | | /-100+ | | | \----- Csa11g097230.1 [Camelina sativa] (57) | | /-100+ | | | \---------- Csa18g034760.1 [Camelina sativa] (51) | | /-96-+ --100+ | | | /----- Cagra.0542s0037.1.p [Capsella grandiflora] (137) | | | \---100---+ | | /-100+ \----- Carubv10026752m [Capsella rubella] (160) | | | | | | | \-------------------- Bostr.26833s0095.1.p [Boechera stricta] (66) | \--------------100-------------+ | | /----- 496302 [Arabidopsis lyrata] (49) | | | | \---------79--------+----- AT5G61430.1 [Arabidopsis thaliana] (91) | | | \----- Araha.1448s0011.1.p [Arabidopsis halleri] (119) | \------------------------------------------------------------- Thhalv10004550m [Eutrema salsugineum] (138) Root part of tree: /------------------------------------------------------------------ RrC9905_p1 [Raphanus raphanistrum] (1) | |------------------------------------------------------------------ Rsa1.0_00166.1_g00017.1 [Raphanus sativus] (87) | | /----------------------------------------------- (304) | | | | /--------- XP_013595819.1 [Brassica oleracea] (5) | | | + | /---100---+--------- GSBRNA2T00020292001 [Brassica napus] (126) | | | | | /---100---+ | \--------- XP_009136471.1 [Brassica rapa] (146) | | | /---100--+ | | | | | /--------- Rsa1.0_07584.1_g00001.1 [Raphanus sativus] (110) | | | | \---100---+ | | | /---100---+ \--------- RrC422_p5 [Raphanus raphanistrum] (121) | | | | | \---100--+ \---95---+ \---------------------------- 676729696 [Sisymbrium irio] (128) | | | \-------------------------------------- Tp2g24630 [Thellungiella parvula] (75) | | /------------------- XP_013618540.1 [Brassica oleracea] (22) | | \-----------------100-----------------+ /--------- XP_009130171.1 [Brassica rapa] (32) \---100---+ \--------- GSBRNA2T00075573001 [Brassica napus] (130) |