PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Phylogenetic Tree for OGEM3119
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Subtree rooted at node 115: /----- Cagra.0483s0048.1.p [Capsella grandiflora] (2) /-100+ | \----- Carubv10018614m [Capsella rubella] (53) /-97-+ | \---------- Bostr.13158s0200.1.p [Boechera stricta] (54) | /-100-+ /---------- Csa05g094160.1 [Camelina sativa] (20) | | | | \-100+ /----- Csa07g002650.1 [Camelina sativa] (36) | \-88-+ | \----- Csa16g002710.1 [Camelina sativa] (38) /---100---+ | | /----- 486700 [Arabidopsis lyrata] (10) | | /-100+ | | | \----- Araha.14317s0003.1.p [Arabidopsis halleri] (28) | \----100---+ | \---------- AT3G61950.1 [Arabidopsis thaliana] (40) | | /----- GSBRNA2T00017525001 [Brassica napus] (7) | /-100+ | | \----- GSBRNA2T00017529001 [Brassica napus] (44) | /-100+ | | | /----- XP_009123488.1 [Brassica rapa] (13) /-87-+ | \-100+ | | /-100-+ \----- GSBRNA2T00074800001 [Brassica napus] (18) | | | | | | | | /----- RrC24875_p1 [Raphanus raphanistrum] (24) | | /-63-+ \---100---+ | | | | \----- Rsa1.0_00270.1_g00019.1 [Raphanus sativus] (39) | | | | | | | \--------------------- Tp5g01400 [Thellungiella parvula] (62) | | | | | | /----- Rsa1.0_48359.1_g00001.1 [Raphanus sativus] (16) | | | /---100---+ | \-100+ | \----- RrC184_p6 [Raphanus raphanistrum] (51) /-100+ | | | | | /-100-+ /----- GSBRNA2T00127051001 [Brassica napus] (30) | | | | | /-100+ | | | | | | \----- XP_013602621.1 [Brassica oleracea] (41) | | | | \-100+ | | \-100+ | /----- XP_009116864.1 [Brassica rapa] (55) | | | \-100+ | | | \----- GSBRNA2T00049445001 [Brassica napus] (63) /---------100--------+ | | | | | \--------------------- 676749210 [Sisymbrium irio] (43) | | | | | | /----- KFK35381.1 [Arabis alpina] (5) | | \--------------100-------------+ | | \----- Thhalv10006045m [Eutrema salsugineum] (25) | | | \----------------------------------------- AA61G00549 [Aethionema arabicum] (26) | | /-------------------------- Tp4g28840 [Thellungiella parvula] (4) | | | | /--------------- XP_013636159.1 [Brassica oleracea] (12) | | | | /-61-+ | /----- XP_009142596.1 [Brassica rapa] (23) | | | /-100-+ /-100+ | | | | | | \----- GSBRNA2T00132935001 [Brassica napus] (48) | | | | \-78-+ | | \-100+ \---------- GSBRNA2T00073196001 [Brassica napus] (37) | /-96-+ | | | | | /----- Rsa1.0_00064.1_g00010.1 [Raphanus sativus] (27) | | | \------100------+ | | | \----- RrC3039_p2 [Raphanus raphanistrum] (65) | | | | | \------------------------------- 676734790 [Sisymbrium irio] (21) | | --80-+ /-100+ /----- XP_013634338.1 [Brassica oleracea] (45) | | | /-100+ | | | | \----- GSBRNA2T00038196001 [Brassica napus] (56) | | | /-100+ | | | | | /----- GSBRNA2T00088659001 [Brassica napus] (50) | /-100+ | | \-100+ | | | \---------100--------+ \----- XP_009142452.1 [Brassica rapa] (58) | | | | | | | \--------------- RrC13544_p2 [Raphanus raphanistrum] (66) | /--98-+ | | | | \----------------------------------------- Thhalv10001803m [Eutrema salsugineum] (17) | | | | | \---------------------------------------------- KFK37445.1 [Arabis alpina] (35) | | | | /---------- AT2G46810.1 [Arabidopsis thaliana] (6) | /-100+ | | | | /------100------+ /----- Araha.21152s0005.1.p [Arabidopsis halleri] (29) | | | | \-100+ | | | | \----- 904152 [Arabidopsis lyrata] (61) | | | | | | \-----------100-----------+ /--------------------- Bostr.25993s0085.1.p [Boechera stricta] (11) | | | | | | | | /----- Cagra.0050s0019.1.p [Capsella grandiflora] (22) | | \-100+ /---100---+ \-100+ | | \----- Carubv10023506m [Capsella rubella] (47) | | | | \-100-+ /---------- Csa04g065940.1 [Camelina sativa] (57) | | | | \-100+ /----- Csa06g053320.1 [Camelina sativa] (59) | \-52-+ | \----- Csa05g002350.1 [Camelina sativa] (64) | \--------------------------------------------------------- AA21G00409 [Aethionema arabicum] (33) Root part of tree: /------------------------------------------------------------------- evm.model.supercontig_57.85 [Carica papaya] (1) | | /---------------------- (115) | | |---------------------100--------------------+ /----------- XP_010544881.1 [Tarenaya hassleriana] (49) | \----100---+ | \----------- XP_010559146.1 [Tarenaya hassleriana] (52) | | /----------- Neem_1962_f_7 [Azadirachta indica] (3) | /----100---+ + | \----------- Neem_25112_f_1 [Azadirachta indica] (14) | /---------------100---------------+ | | | /----------- Ciclev10020360m [Citrus clementina] (19) | | \----100---+ | | \----------- orange1.1g013752m [Citrus sinensis] (32) | | | | /----------- Gh_D11G1063 [Gossypium hirsutum] (8) | | /----100---+ | | | \----------- Gorai.007G113300.1 [Gossypium raimondii] (46) \----99----+ /----100---+ | | | /----------- Gorai.007G113200.1 [Gossypium raimondii] (15) | | \----100---+ | | \----------- Gh_D11G3523 [Gossypium hirsutum] (34) | /----100----+ | | | /----------- Gh_A11G0922 [Gossypium hirsutum] (9) | | | /----100---+ | | | | \----------- Cotton_A_15656_BGI-A2_v1.0 [Gossypium arboreum] (31) \----100---+ \----95----+ | \---------------------- Cotton_A_15654_BGI-A2_v1.0 [Gossypium arboreum] (60) | \--------------------------------------------- Thecc1EG005028t1 [Theobroma cacao] (42) |