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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Phylogenetic Tree for OGEM239
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/------------------------------------------------------------------ Cotton_A_26287_BGI-A2_v1.0 [Gossypium arboreum] (1) | |------------------------------------------------------------------ Gh_A09G0899 [Gossypium hirsutum] (64) | | /------------------------------------------------ Thhalv10008125m [Eutrema salsugineum] (2) | | | | /------------------ Bostr.25219s0116.1.p [Boechera stricta] (9) | | | | | | /------ Csa03g011740.1 [Camelina sativa] (22) | | | /-100-+ | | | | \------ Csa14g009740.1 [Camelina sativa] (142) | | | | | | |--98-+------------ Csa17g011740.1 [Camelina sativa] (114) | | | | | | | | /------ Csa12g028200.1 [Camelina sativa] (223) | | | \--66-+ | |--------------86-------------+ \------ Csa11g019590.1 [Camelina sativa] (237) | | | | | | /------ Araha.4834s0001.1.p [Arabidopsis halleri] (27) | | | /-100-+ | | | | \------ 334119 [Arabidopsis lyrata] (96) | | |--90-+ | | | \------------ AT1G08290.1 [Arabidopsis thaliana] (184) | | | | | | /------ Carubv10009617m [Capsella rubella] (29) | | \----100----+ | | \------ Cagra.4395s0018.1.p [Capsella grandiflora] (122) | | | | /------ GSBRNA2T00019362001 [Brassica napus] (11) | | /-100-+ | | | \------ XP_013599634.1 [Brassica oleracea] (221) | | /-100-+ | | | | /------ XP_009118382.1 [Brassica rapa] (113) | | | \-100-+ | |-------------100-------------+ \------ GSBRNA2T00122233001 [Brassica napus] (125) | | | | | | /------ Rsa1.0_01151.1_g00002.1 [Raphanus sativus] (148) | | \----100----+ | | \------ RrC14953_p1 [Raphanus raphanistrum] (175) | | | | /------ XP_013587539.1 [Brassica oleracea] (30) | | /--98-+ | | | \------ GSBRNA2T00100595001 [Brassica napus] (128) | | /--92-+ | /--57-+ | | /------ XP_009148084.1 [Brassica rapa] (39) | | | | \-100-+ | | | | \------ GSBRNA2T00156255001 [Brassica napus] (99) | | | /--95-+ | | | | | /------ RrC1479_p2 [Raphanus raphanistrum] (88) | | | | | /--73-+ | | | | | | \------ Rsa1.0_00612.1_g00012.1 [Raphanus sativus] (119) | | |-----------80----------+ \--79-+ | | | | \------------ Rsa1.0_00612.1_g00011.1 [Raphanus sativus] (228) | | | | | | | \------------------------ Tp1g06920 [Thellungiella parvula] (189) | | | | | | /------ XP_010557407.1 [Tarenaya hassleriana] (34) | | |--------------------79-------------------+ | | | \------ XP_010521663.1 [Tarenaya hassleriana] (188) | | | | | | /------------------ Gh_A07G0996 [Gossypium hirsutum] (67) | | | | | | | | /------ Gorai.001G121700.1 [Gossypium raimondii] (95) | | | /--53-+ /--94-+ | | | | | | \------ Gh_D07G1074 [Gossypium hirsutum] (167) | | | | \--89-+ | | | /--97-+ \------------ Cotton_A_09582_BGI-A2_v1.0 [Gossypium arboreum] (250) | | | | | | | | | \------------------------ Thecc1EG041441t1 [Theobroma cacao] (220) | | | /--95-+ | | | | | /------ Ciclev10028757m [Citrus clementina] (110) | | | | \----------100----------+ | | | /--89-+ \------ orange1.1g039549m [Citrus sinensis] (156) | | | | | | | | | | /------ Eucgr.B03870.1.p [Eucalyptus grandis] (134) | | |--57-+ \-------------100-------------+ | | | | \------ EcC000949.10 [Eucalyptus camaldulensis] (217) | | | | | | | \------------------------------------------ evm.TU.contig_35924.1 [Carica papaya] (152) | | | | | |------------------------------------------------ KFK43143.1 [Arabis alpina] (97) | | | | | |------------------------------------------------ AA731G00002 [Aethionema arabicum] (133) | | | | | \------------------------------------------------ 676723274 [Sisymbrium irio] (174) | | | |------------------------------------------------------ XP_010528971.1 [Tarenaya hassleriana] (3) | | | | /------ GSBRNA2T00038269001 [Brassica napus] (4) | | /-100-+ | | | \------ XP_013594912.1 [Brassica oleracea] (120) | | /-100-+ | | | | /------ GSBRNA2T00022855001 [Brassica napus] (70) | | | \-100-+ | | /----100----+ \------ XP_009110075.1 [Brassica rapa] (236) | | | | | | | | /------ RrC1442_p4 [Raphanus raphanistrum] (35) | | | \----100----+ | | | \------ Rsa1.0_00005.1_g00006.1 [Raphanus sativus] (170) | | | | | | /------ XP_013585320.1 [Brassica oleracea] (53) | | | /--94-+ | | | | \------ GSBRNA2T00122356001 [Brassica napus] (85) | | /--62-+ /--95-+ | | | | | \------------ XP_009145538.1 [Brassica rapa] (270) | | | | /--93-+ | | | | | | /------ RrC7414_p3 [Raphanus raphanistrum] (62) | | | | | \----100----+ | | | |--64-+ \------ Rsa1.0_00767.1_g00007.1 [Raphanus sativus] (72) | | /--62-+ | | | | | | | \------------------------ 676794150 [Sisymbrium irio] (235) | | | | | | | | | \------------------------------ Tp3g18910 [Thellungiella parvula] (163) | | | | | | | \------------------------------------ Thhalv10021932m [Eutrema salsugineum] (28) | | | | | | /------ Csa01g023970.1 [Camelina sativa] (16) | | | | | | | /-100-+------ Csa15g031250.1 [Camelina sativa] (290) | | | | | | | | | \------ Csa19g028870.1 [Camelina sativa] (225) | | | /--91-+ | | /--62-+ | | /------ Cagra.10399s0008.1.p [Capsella grandiflora] (42) | | | | | \-100-+ | | | | /--67-+ \------ Carubv10016432m [Capsella rubella] (165) | | | | | | | | | | | \------------------ Bostr.19424s0561.1.p [Boechera stricta] (20) | | | |-------100-------+ | | | | | /------------ AT3G20880.1 [Arabidopsis thaliana] (17) | |--60-+ | | | | | | | \-----98----+ /------ Araha.6726s0005.1.p [Arabidopsis halleri] (126) | | | | \-100-+ | | | | \------ 318837 [Arabidopsis lyrata] (180) | | | | | | | \------------------------------------------ KFK39406.1 [Arabis alpina] (49) | | | | | \------------------------------------------------ AA26G00751 [Aethionema arabicum] (60) | | | | /------ Gh_A02G1056 [Gossypium hirsutum] (5) | | /--97-+ | | | \------ Cotton_A_40524_BGI-A2_v1.0 [Gossypium arboreum] (25) | |-------------------100-------------------+ | | | /------ Gh_D03G0634 [Gossypium hirsutum] (57) | | \-100-+ | | \------ Gorai.003G089200.1 [Gossypium raimondii] (213) | | | | /------------ Cotton_A_37922_BGI-A2_v1.0 [Gossypium arboreum] (6) | | | | | | /------ Gh_D13G0718 [Gossypium hirsutum] (73) | | /--75-+--94-+ | | | | \------ Gorai.013G080100.1 [Gossypium raimondii] (117) | | | | | | /--91-+ \------------ Gh_A13G2132 [Gossypium hirsutum] (211) | | | | | | /--91-+ \------------------ Gh_Sca040884G01 [Gossypium hirsutum] (79) | | | | | | | \------------------------ Thecc1EG011858t1 [Theobroma cacao] (186) | | | | | | /------ Ciclev10033535m [Citrus clementina] (21) | | | /-100-+ | | | | \------ orange1.1g046329m [Citrus sinensis] (178) | |-----------59----------+--------50-------+ | | | \------------ Neem_13126_f_1 [Azadirachta indica] (230) | | | | | | /------ EcS785330.10 [Eucalyptus camaldulensis] (68) | | |-----------97----------+ | | | \------ Eucgr.B03047.1.p [Eucalyptus grandis] (157) | | | | | \------------------------------ evm.model.supercontig_1.215 [Carica papaya] (173) | | | | /------------ XP_013635245.1 [Brassica oleracea] (7) | | | | |--------------------86-------------------+ /------ GSBRNA2T00149063001 [Brassica napus] (111) | | \-100-+ | | \------ XP_009139023.1 [Brassica rapa] (137) | | | | /------ Cotton_A_07802_BGI-A2_v1.0 [Gossypium arboreum] (8) | | /-100-+ | | | \------ Gh_A09G1165 [Gossypium hirsutum] (192) | | /-100-+ | | | | /------ Gorai.006G138700.1 [Gossypium raimondii] (59) | | | \-100-+ + |-----------------50----------------+ \------ Gh_D09G1170 [Gossypium hirsutum] (65) | | | | | \------------------ Eucgr.A02400.1.p [Eucalyptus grandis] (172) | | | | /------ GSBRNA2T00098885001 [Brassica napus] (10) | | | | | |------ GSBRNA2T00022407001 [Brassica napus] (76) | |----------------------100----------------------+ | | |------ XP_009104072.1 [Brassica rapa] (140) | | | | | \------ XP_013590861.1 [Brassica oleracea] (194) | | | | /------------ Neem_6637_f_2 [Azadirachta indica] (12) | | | | | /--82-+ /------ orange1.1g019587m [Citrus sinensis] (98) | | | \-100-+ | |-----------------55----------------+ \------ Ciclev10017716m [Citrus clementina] (159) | | | | | \------------------ Eucgr.J00788.1.p [Eucalyptus grandis] (130) | | | | /------ Csa06g033450.1 [Camelina sativa] (13) | | /--80-+ | | | \------ Csa04g044160.1 [Camelina sativa] (18) | | /--68-+ | | | \------------ Csa09g070150.1 [Camelina sativa] (177) | | | | | | /------ Cagra.0210s0004.1.p [Capsella grandiflora] (58) | |-----------------50----------------+-----90----+ | | | \------ Carubv10017428m [Capsella rubella] (198) | | | | | \------------------ Bostr.20903s0019.1.p [Boechera stricta] (155) | | | | /------ RrC10185_p2 [Raphanus raphanistrum] (14) | | /----100----+ | | | \------ Rsa1.0_00325.1_g00003.1 [Raphanus sativus] (183) | | | | | /--86-+ /------ XP_009148529.1 [Brassica rapa] (41) | | | | /-100-+ | | | | | \------ GSBRNA2T00105353001 [Brassica napus] (154) | | | \--93-+ | |--------------75-------------+ | /------ GSBRNA2T00008923001 [Brassica napus] (87) | | | \--96-+ | | | \------ XP_013585099.1 [Brassica oleracea] (116) | | | | | \------------------------ 676755468 [Sisymbrium irio] (280) | | | | /------ Gh_A01G1108 [Gossypium hirsutum] (15) | | /--78-+ | | | \------ Cotton_A_39901_BGI-A2_v1.0 [Gossypium arboreum] (185) | |-------------------100-------------------+ | | | /------ Gh_D01G1184 [Gossypium hirsutum] (130) | | \-100-+ | | \------ Gorai.002G152600.1 [Gossypium raimondii] (234) | | | | /------------------------------ Csa16204s010.1 [Camelina sativa] (19) | | | | | | /------ XP_013589024.1 [Brassica oleracea] (23) | | | /-100-+ | | | | \------ GSBRNA2T00029192001 [Brassica napus] (83) | | | | | | | /-100-+------------ XP_009148198.1 [Brassica rapa] (51) | | | | | | | | | \------------ GSBRNA2T00021182001 [Brassica napus] (180) | | |-----68----+ | | | | /------ Rsa1.0_01262.1_g00004.1 [Raphanus sativus] (93) | | | \----100----+ | | | \------ RrC7863_p3 [Raphanus raphanistrum] (215) | | | | | | /------------ AT1G51220.1 [Arabidopsis thaliana] (33) | | | | | | | /-----93----+ /------ 892084 [Arabidopsis lyrata] (179) | | | | \--97-+ | | | | \------ Araha.30494s0001.1.p [Arabidopsis halleri] (260) | | | | | /-100-+ | | /------------ Csa14g059550.1 [Camelina sativa] (55) | | | |--57-+ | | | | | | /--97-+ /------ Csa03g058110.1 [Camelina sativa] (160) | | | | | | \--91-+ | | | | | | \------ Csa17g089980.1 [Camelina sativa] (129) | | |-----------50----------+ | | | | | | \--60-+ /------ Carubv10012613m [Capsella rubella] (123) | | | | |----100----+ | | | | | \------ Cagra.2093s0011.1.p [Capsella grandiflora] (149) | | | | | | | | | \------------------ Bostr.26675s0068.1.p [Boechera stricta] (232) | | | | | | | | /------ RrC15085_p1 [Raphanus raphanistrum] (36) | | | | /----100----+ | | | | | \------ Rsa1.0_00149.1_g00017.1 [Raphanus sativus] (63) | | | | | | | | |-----78----+ /------ GSBRNA2T00058878001 [Brassica napus] (84) | | | | | /--96-+ | | | | | | \------ XP_013639632.1 [Brassica oleracea] (136) | | | | \--92-+ | | | | | /------ GSBRNA2T00043370001 [Brassica napus] (182) | | | | \--96-+ | | | | \------ XP_009144966.1 [Brassica rapa] (222) | | | | | | | |------------------------------ 676714734 [Sisymbrium irio] (71) | | | | | | | |------------------------------ Thhalv10011987m [Eutrema salsugineum] (141) | | | | | | | |------------------------------ Tp1g37960 [Thellungiella parvula] (161) | | | | | | | \------------------------------ KFK35868.1 [Arabis alpina] (224) | | | | | |------------------------------------------------------ XP_010545885.1 [Tarenaya hassleriana] (24) | | | | | | /------ Gh_D13G2257 [Gossypium hirsutum] (26) | | | | | | | |------ Gorai.013G250800.1 [Gossypium raimondii] (89) | | | /-100-+ | | | | |------ Gh_A13G1869 [Gossypium hirsutum] (170) | | | | | | | |--------------------80-------------------+ \------ Cotton_A_02564_BGI-A2_v1.0 [Gossypium arboreum] (164) | | | | | | | \------------ Thecc1EG040610t1 [Theobroma cacao] (230) | | | | | | /------ KFK35012.1 [Arabis alpina] (32) | | |-----------------------59----------------------+ | | | \------ AA61G00213 [Aethionema arabicum] (140) | | | | | | /------------ Cotton_A_12503_BGI-A2_v1.0 [Gossypium arboreum] (37) | | | | | | | |------------ Gh_A11G1476 [Gossypium hirsutum] (110) | | | /--95-+ | | | | | /------ Gh_D11G1633 [Gossypium hirsutum] (132) | | | | \-100-+ | | | /--88-+ \------ Gorai.007G177300.1 [Gossypium raimondii] (144) | | | | | | | |--------------80-------------+ \------------------ Gh_D08G0579 [Gossypium hirsutum] (147) | | | | | | | \------------------------ Thecc1EG005892t1 [Theobroma cacao] (74) | | | | | | /------ Eucgr.F00336.1.p [Eucalyptus grandis] (38) | | | /--52-+ | | | | \------ XP_010543922.1 [Tarenaya hassleriana] (50) | | | /--50-+ | | | | \------------ AA54G00114 [Aethionema arabicum] (40) | | |-----------------50----------------+ | | | \------------------ KFK23380.1 [Arabis alpina] (80) | | | | | |------------------------------------------------------ Ciclev10027410m [Citrus clementina] (43) | | | | | | /------ Neem_27920_f_1 [Azadirachta indica] (44) | | |----------------------100----------------------+ | | | \------ Neem_6870_f_4 [Azadirachta indica] (45) | | | | | |------------------------------------------------------ Tp5g04960 [Thellungiella parvula] (46) | | | | | |------------------------------------------------------ evm.model.supercontig_84.74 [Carica papaya] (47) | | | | | | /------ Csa03g038710.1 [Camelina sativa] (48) | | | | | | |----------------------100----------------------+------ Csa14g044470.1 [Camelina sativa] (100) | | | | | | | \------ Csa17g062250.1 [Camelina sativa] (131) | | | | | | /------ Araha.5541s0001.1.p [Arabidopsis halleri] (52) | | | /-100-+ | | | | \------ 473652 [Arabidopsis lyrata] (196) | | |--------------------88-------------------+ | | | \------------ AT1G34790.1 [Arabidopsis thaliana] (199) | | | | | | /------ Gh_D06G0302 [Gossypium hirsutum] (54) | | | /--95-+ | | | | \------ Gorai.010G039600.1 [Gossypium raimondii] (212) | | | /-100-+ | | | | | /------ Cotton_A_02832_BGI-A2_v1.0 [Gossypium arboreum] (139) | | | | \--86-+ | | | | \------ Gh_A06G0282 [Gossypium hirsutum] (145) | | | /--86-+ | | | | |------------------ Gh_Sca066928G01 [Gossypium hirsutum] (191) | | | | | | | | | \------------------ Thecc1EG034881t1 [Theobroma cacao] (197) | | | /--82-+ | | | | | /------ Ciclev10003648m [Citrus clementina] (118) | | | | | /-100-+ | | | | | | \------ orange1.1g037179m [Citrus sinensis] (210) | | |-----------83----------+ \-----97----+ | | | | \------------ Neem_3281_f_1 [Azadirachta indica] (193) | | | | \--69-+ | \------------------------------ evm.model.supercontig_36.149 [Carica papaya] (61) | | | | /------ KFK43594.1 [Arabis alpina] (56) | |-----------------------61----------------------+ | | \------ Thhalv10009489m [Eutrema salsugineum] (220) | | | | /------ 486217 [Arabidopsis lyrata] (66) | |-----------------------53----------------------+ | | \------ AT3G57670.1 [Arabidopsis thaliana] (94) | | | | /------ XP_010524180.1 [Tarenaya hassleriana] (69) | |-----------------------93----------------------+ | | \------ XP_010547082.1 [Tarenaya hassleriana] (82) | | | | /------------ Csa03g017100.1 [Camelina sativa] (75) | | | | | /-100-+ /------ Csa17g018620.1 [Camelina sativa] (171) | | | \--94-+ | | | \------ Csa14g016260.1 [Camelina sativa] (214) | | /--70-+ | | | | /------ Carubv10012013m [Capsella rubella] (153) | | | \----100----+ | | /-100-+ \------ Cagra.3501s0170.1.p [Capsella grandiflora] (210) | | | | | | | \------------------------ Bostr.13671s0117.1.p [Boechera stricta] (120) | |-----------50----------+ | | | /------ AT1G13290.1 [Arabidopsis thaliana] (143) | | \-----------55----------+ | | \------ 471484 [Arabidopsis lyrata] (158) | | | |------------------------------------------------------ Thecc1EG024788t1 [Theobroma cacao] (77) | | | | /------------------ Rsa1.0_02639.1_g00001.1 [Raphanus sativus] (78) | | | | | | /------ GSBRNA2T00060946001 [Brassica napus] (90) | | /--72-+ /--98-+ | | | | | \------ XP_009114722.1 [Brassica rapa] (115) | | | \--87-+ | | | | /------ XP_013591138.1 [Brassica oleracea] (190) | | | \-100-+ | |--------------65-------------+ \------ GSBRNA2T00115549001 [Brassica napus] (187) | | | | | |------------------------ 676708338 [Sisymbrium irio] (150) | | | | | \------------------------ Tp1g29860 [Thellungiella parvula] (195) | | | | /------ XP_013600451.1 [Brassica oleracea] (81) | | /-100-+ | | | \------ GSBRNA2T00155781001 [Brassica napus] (127) | | /-100-+ | | | | /------ XP_009116471.1 [Brassica rapa] (176) | | | \--92-+ | |-----------------86----------------+ \------ GSBRNA2T00121951001 [Brassica napus] (229) | | | | | | /------ RrC2730_p1 [Raphanus raphanistrum] (162) | | \-----91----+ | | \------ Rsa1.0_00966.1_g00007.1 [Raphanus sativus] (227) | | | |------------------------------------------------------ EcC049775.10 [Eucalyptus camaldulensis] (86) | | | | /------ Neem_22401_f_1 [Azadirachta indica] (91) | |-----------------------99----------------------+ | | \------ Neem_2485_f_1 [Azadirachta indica] (151) | | | |------------------------------------------------------ GSBRNA2T00035521001 [Brassica napus] (92) | | | |------------------------------------------------------ Thhalv10006035m [Eutrema salsugineum] (112) | | | |------------------------------------------------------ Thhalv10001872m [Eutrema salsugineum] (121) | | | |------------------------------------------------------ 676754854 [Sisymbrium irio] (124) | | | | /------ Carubv10012266m [Capsella rubella] (135) | |----------------------100----------------------+ | | \------ Cagra.0764s0003.1.p [Capsella grandiflora] (160) | | | |------------------------------------------------------ Bostr.1040s0072.1.p [Boechera stricta] (138) | | | | /------ Rsa1.0_10331.1_g00001.1 [Raphanus sativus] (146) | |-----------------------62----------------------+ | | \------ RrC5676_p1 [Raphanus raphanistrum] (240) | | | |------------------------------------------------------ Eucgr.J01266.1.p [Eucalyptus grandis] (150) | | | |------------------------------------------------------ evm.TU.contig_31438.1 [Carica papaya] (168) | | | | /------ orange1.1g040794m [Citrus sinensis] (169) | |----------------------100----------------------+ | | \------ Ciclev10005189m [Citrus clementina] (190) | | | |------------------------------------------------------ XP_010547254.1 [Tarenaya hassleriana] (181) | | | |------------------------------------------------------ Tp1g11800 [Thellungiella parvula] (200) | | | |------------------------------------------------------ RrC51008_p1 [Raphanus raphanistrum] (216) | | | |------------------------------------------------------ orange1.1g037234m [Citrus sinensis] (218) | | | |------------------------------------------------------ Araha.1744s0003.1.p [Arabidopsis halleri] (219) | | | |------------------------------------------------------ XP_010554847.1 [Tarenaya hassleriana] (226) | | | |------------------------------------------------------ AA65G00358 [Aethionema arabicum] (231) | | | \------------------------------------------------------ evm.model.supercontig_85.133 [Carica papaya] (233) | | /------ Gorai.006G111400.1 [Gossypium raimondii] (31) \--------------------------91-------------------------+ \------ Gh_D09G0924 [Gossypium hirsutum] (166) |