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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Phylogenetic Tree for OGEM2022
Phylogenetic tree for protein ? help Back to Top |
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Subtree rooted at node 108: /----- Carubv10012162m [Capsella rubella] (2) /---100---+ | \----- Cagra.4122s0002.1.p [Capsella grandiflora] (21) | | /----- Csa03g059130.1 [Camelina sativa] (29) /-100-+ | | | /-100+----- Csa17g092100.1 [Camelina sativa] (56) | | | | | \-100+ \----- Csa14g060390.1 [Camelina sativa] (57) | | /------100-----+ \---------- Bostr.0124s0004.1.p [Boechera stricta] (55) | | | | /----- 314555 [Arabidopsis lyrata] (6) | | /-74-+ | | | \----- AT1G52150.2 [Arabidopsis thaliana] (30) | \----55----+ | \---------- Araha.2499s0002.1.p [Arabidopsis halleri] (15) | | /--------------------- Rsa1.0_00125.1_g00012.1 [Raphanus sativus] (14) | | | | /----- GSBRNA2T00114236001 [Brassica napus] (18) | | /-99-+ | /-100+ | \----- XP_009107147.1 [Brassica rapa] (65) /-100+ | | /-62-+ | | | | | \---------- GSBRNA2T00098397001 [Brassica napus] (31) | | | \-100-+ | | | \--------------- XP_013621760.1 [Brassica oleracea] (41) | | /-100+ | | | | /----- RrC974_p5 [Raphanus raphanistrum] (16) | | | | /---100---+ | | | | | \----- Rsa1.0_03390.1_g00004.1 [Raphanus sativus] (34) | | | | | | | | \----100---+ /----- GSBRNA2T00029833001 [Brassica napus] (26) | | | | /-97-+ | | | | | \----- XP_009147709.1 [Brassica rapa] (48) /-100+ \-100+ \-100+ | | | | /----- GSBRNA2T00088278001 [Brassica napus] (62) | | | \-100+ | | | \----- XP_013592012.1 [Brassica oleracea] (64) | | | | | | /---------- 676786782 [Sisymbrium irio] (33) | | | | /-100-+ | \---------80---------+ /----- Thhalv10011238m [Eutrema salsugineum] (53) | | | \-95-+ | | | \----- Tp1g38700 [Thellungiella parvula] (71) | | | | | \----------------------------------------- AA15G00017 [Aethionema arabicum] (40) | | | | /----- XP_010535179.1 [Tarenaya hassleriana] (17) /-82-+ \-------------------100------------------+ | | \----- XP_010545669.1 [Tarenaya hassleriana] (50) | | | | /----- Ciclev10024891m [Citrus clementina] (4) | | /-100+ | | | \----- orange1.1g048771m [Citrus sinensis] (54) /-100+ \-------------------100-------------------+ | | \---------- Neem_2214_f_1 [Azadirachta indica] (11) | | | | /---------- Thecc1EG028866t1 [Theobroma cacao] (22) | | | | | | /----- Gh_A05G1085 [Gossypium hirsutum] (37) | \----------------------100---------------------+ | --100+ | |----- Gh_D05G1263 [Gossypium hirsutum] (45) | \-100+ | |----- Gorai.009G136800.1 [Gossypium raimondii] (69) | | | \----- Cotton_A_05396_BGI-A2_v1.0 [Gossypium arboreum] (70) | \-------------------------------------------------------------- Eucgr.F03066.1.p [Eucalyptus grandis] (58) Subtree rooted at node 143: /--------------- (108) | | /----- Rsa1.0_13763.1_g00001.1 [Raphanus sativus] (24) /--86-+ /-100+ | | | \----- Csa18g034040.1 [Camelina sativa] (39) | \-100+ /-79-+ \---------- Neem_29055_f_1 [Azadirachta indica] (44) | | | | /----- Eucgr.C00605.1.p [Eucalyptus grandis] (61) | \------100------+ | \----- EcC051199.10 [Eucalyptus camaldulensis] (67) /------------80-----------+ | | /----- Ciclev10007435m [Citrus clementina] (20) | | /-100+ | | | \----- orange1.1g003071m [Citrus sinensis] (72) | \-------94------+ | \---------- Neem_11133_f_6 [Azadirachta indica] (52) | | /----- Araha.17232s0001.1.p [Arabidopsis halleri] (5) | /-100+ | | \----- 491408 [Arabidopsis lyrata] (63) | /-100+ | | \---------- AT4G32880.1 [Arabidopsis thaliana] (38) | /--64-+ | | \--------------- Bostr.7867s1139.1.p [Boechera stricta] (46) | | | | /----- Csa10g009430.1 [Camelina sativa] (7) | /-100+ | | | | /-100+----- Csa12g012990.1 [Camelina sativa] (9) | | | | | | | | | \----- Csa11g010300.1 [Camelina sativa] (23) | | \----83----+ | /-92-+ | /----- Carubv10004127m [Capsella rubella] (68) | | | \-100+ /-100+ | | \----- Cagra.4093s0017.1.p [Capsella grandiflora] (73) | | | | | | | \-------------------------- Thhalv10024403m [Eutrema salsugineum] (78) | | | | | | /--------------- XP_013622315.1 [Brassica oleracea] (10) | | | | | | | | /----- GSBRNA2T00040012001 [Brassica napus] (13) | | |------100------+ /-100+ | | | | | \----- GSBRNA2T00081269001 [Brassica napus] (35) | | /-83-+ \-53-+ | | | | \---------- XP_009108824.1 [Brassica rapa] (47) | | | | | | | | /----- XP_009125299.1 [Brassica rapa] (12) | | | | /-100+ | | | | | \----- GSBRNA2T00088471001 [Brassica napus] (19) | | | | /-100+ /-95-+ | /-100+ | | \---------- Rsa1.0_00017.1_g00136.1 [Raphanus sativus] (36) | | | | | |-------54------+ | | | | | | \--------------- RrC810_p1 [Raphanus raphanistrum] (25) | | | | | | | | | /-100+ | \------------------------------- Tp7g30650 [Thellungiella parvula] (43) | | | | | | | | | | | \------------------------------------ 676780838 [Sisymbrium irio] (51) | | \-100-+ | | | | \----------------------------------------- AA651G00001 [Aethionema arabicum] (76) | | | | | \---------------------------------------------- XP_010526102.1 [Tarenaya hassleriana] (75) | | --100+ | /----- Gh_A06G0833 [Gossypium hirsutum] (3) | | /-99-+ | | | \----- Cotton_A_22259_BGI-A2_v1.0 [Gossypium arboreum] (66) | \----------------------100---------------------+ | | /----- Gh_D06G0966 [Gossypium hirsutum] (32) | \-100+ | \----- Gorai.010G105900.1 [Gossypium raimondii] (60) | | /----- Gh_A05G0364 [Gossypium hirsutum] (42) | /-74-+ | | \----- Cotton_A_20473_BGI-A2_v1.0 [Gossypium arboreum] (49) \------------------------100------------------------+ | /----- Gorai.009G049100.1 [Gossypium raimondii] (59) \-100+ \----- Gh_D05G0479 [Gossypium hirsutum] (77) Root part of tree: /------------------------------------------------------------------- Gh_D07G0220 [Gossypium hirsutum] (1) | |------------------------------------------------------------------- Gorai.001G026800.1 [Gossypium raimondii] (27) | + /---------------------- (143) | /----------100---------+ | | \---------------------- Thecc1EG037207t1 [Theobroma cacao] (28) \---------100---------+ | /---------------------- Gh_A07G0163 [Gossypium hirsutum] (8) \----------99----------+ \---------------------- Cotton_A_07197_BGI-A2_v1.0 [Gossypium arboreum] (74) |