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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Phylogenetic Tree for OGEM2012
Phylogenetic tree for protein ? help Back to Top |
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Subtree rooted at node 140: /----- Csa12g022020.1 [Camelina sativa] (3) /-100+ | \----- Csa11g015260.1 [Camelina sativa] (79) /-100+ | \---------- Csa10g014120.1 [Camelina sativa] (57) /--89-+ | | /----- Carubv10005324m [Capsella rubella] (24) | \---100---+ /-99-+ \----- Cagra.1225s0041.1.p [Capsella grandiflora] (28) | | | \--------------------- Bostr.7867s0691.1.p [Boechera stricta] (66) | /-80-+ /----- 857774 [Arabidopsis lyrata] (8) | | /-100+ | | | \----- Araha.3365s0004.1.p [Arabidopsis halleri] (17) | \-------98------+ | \---------- AT4G28500.1 [Arabidopsis thaliana] (25) | | /----- GSBRNA2T00065806001 [Brassica napus] (10) | /-100+ | | \----- XP_013609952.1 [Brassica oleracea] (60) | /-91-+ | | | /----- XP_009129565.1 [Brassica rapa] (71) | | \-100+ | /--72-+ \----- GSBRNA2T00058097001 [Brassica napus] (72) | | | | | | /----- RrC1054_p2 [Raphanus raphanistrum] (59) | | \---100---+ | | \----- Rsa1.0_00476.1_g00004.1 [Raphanus sativus] (65) | | /-50-+ | /----- XP_013596215.1 [Brassica oleracea] (15) | | /-50-+ /-100+ | | | | | \----- GSBRNA2T00154717001 [Brassica napus] (20) | | | | /-98-+ | | | | | \---------- Rsa1.0_00113.1_g00021.1 [Raphanus sativus] (69) | | | | | | | | | | /----- XP_009137790.1 [Brassica rapa] (35) | | | \-100-+---100---+ | | | | \----- GSBRNA2T00044371001 [Brassica napus] (48) | |-50-+ | | | | \--------------- RrC6425_p1 [Raphanus raphanistrum] (63) /-100+ | | | | | |-------------------------- Tp7g26480 [Thellungiella parvula] (40) | | | | | | | |-------------------------- Thhalv10025819m [Eutrema salsugineum] (50) | | | | | | | \-------------------------- 676753192 [Sisymbrium irio] (55) | | | | | \------------------------------- KFK29384.1 [Arabis alpina] (76) | | | |------------------------------------ XP_010526500.1 [Tarenaya hassleriana] (41) | | | \------------------------------------ AA102G00007 [Aethionema arabicum] (68) | | /----- Neem_14534_f_2 [Azadirachta indica] (4) | /-100+ /-100+ | \----- Neem_12089_f_2 [Azadirachta indica] (74) | | /----94----+ | | | \---------- Eucgr.K01061.1.p [Eucalyptus grandis] (36) | | | | | | /----- Gh_D12G1407 [Gossypium hirsutum] (9) | | | /-97-+ | | /-95-+ | \----- Gorai.008G155200.1 [Gossypium raimondii] (73) | | | | /-100+ | | | | | | /----- Gh_A12G1285 [Gossypium hirsutum] (32) | | | | | \-84-+ | | | \-100-+ \----- Cotton_A_04481_BGI-A2_v1.0 [Gossypium arboreum] (42) | | /-95-+ | /--80-+ | | | \--------------- Thecc1EG008229t1 [Theobroma cacao] (30) | | | | | | | | | | /----- orange1.1g021635m [Citrus sinensis] (7) | | \---100---+ \---------100--------+ | | | \----- Ciclev10017822m [Citrus clementina] (51) | | | | | \------------------------------- evm.model.supercontig_83.99 [Carica papaya] (81) | | | | /----- Gorai.010G157600.1 [Gossypium raimondii] (21) | | /-100+ | | | \----- Gh_D06G1417 [Gossypium hirsutum] (44) | \----------------100----------------+ | | /----- Cotton_A_37659_BGI-A2_v1.0 [Gossypium arboreum] (27) | \-99-+ | \----- Gh_A06G2028 [Gossypium hirsutum] (52) | | /----- Cotton_A_11313_BGI-A2_v1.0 [Gossypium arboreum] (6) | /-67-+ | | \----- Gh_A05G1339 [Gossypium hirsutum] (12) | /-100+ | | | /----- Gh_D05G1508 [Gossypium hirsutum] (11) | | \-100+ /-100+-----------------100----------------+ \----- Gorai.009G166300.1 [Gossypium raimondii] (22) | | | | | \--------------- Thecc1EG029798t1 [Theobroma cacao] (54) | | | | /----- Eucgr.D00591.1.p [Eucalyptus grandis] (13) | | /-89-+ | | | \----- Eucgr.D00592.1.p [Eucalyptus grandis] (80) | | | | | /-100+ /----- Eucgr.D00594.1.p [Eucalyptus grandis] (26) | | | | | | | | \-91-+----- Eucgr.D00595.1.p [Eucalyptus grandis] (29) | | | | /-89-+ | /--87-+ \----- EcS577108.10 [Eucalyptus camaldulensis] (77) | | | | | | | | | | /----- Eucgr.E03226.1.p [Eucalyptus grandis] (14) | | |--------------57--------------+ \---100---+ | | | | \----- EcC025730.20 [Eucalyptus camaldulensis] (23) | | | | | | | \--------------------- evm.model.supercontig_2586.1 [Carica papaya] (37) | | | | | | /----- Ciclev10015976m [Citrus clementina] (43) --51-+ | \----------------------100---------------------+ | | \----- Neem_17750_f_1 [Azadirachta indica] (47) | | | \--------------------------------------------------------- XP_010549363.1 [Tarenaya hassleriana] (38) | | /----- Carubv10009638m [Capsella rubella] (34) | /-100+ | | \----- Cagra.1822s0012.1.p [Capsella grandiflora] (64) \-------------------------92------------------------+ | /----- Csa17g039350.1 [Camelina sativa] (46) \-100+ \----- Csa03g031810.1 [Camelina sativa] (70) Root part of tree: /------------------------------------------------------------------- Tp1g24720 [Thellungiella parvula] (1) | | /-------- XP_009102906.1 [Brassica rapa] (5) | /---63---+ | | \-------- GSBRNA2T00089877001 [Brassica napus] (49) |-----------------------100-----------------------+ | | /-------- GSBRNA2T00157940001 [Brassica napus] (53) | \---100--+ | \-------- XP_013596124.1 [Brassica oleracea] (67) | | /-------- Rsa1.0_00601.1_g00016.1 [Raphanus sativus] (2) | /-------100------+ | | \-------- RrC18663_p1 [Raphanus raphanistrum] (58) + | | |------------------------- 676750274 [Sisymbrium irio] (31) | /----------------98---------------+ | | | /----------------- XP_009113660.1 [Brassica rapa] (33) | | | | | | | |----------------- GSBRNA2T00003406001 [Brassica napus] (39) | | \--100--+ | | | /-------- GSBRNA2T00046259001 [Brassica napus] (45) | | \---100--+ | | \-------- XP_013638897.1 [Brassica oleracea] (78) | | | | /-------- (140) | | /-------55-------+ \---98--+ | \-------- Bostr.15697s0168.1.p [Boechera stricta] (56) | | | /---61--+ /-------- 890389 [Arabidopsis lyrata] (16) | | | /---99---+ | | | | \-------- Araha.5599s0009.1.p [Arabidopsis halleri] (62) | /---63---+ \---99--+ | | | \----------------- AT1G28470.1 [Arabidopsis thaliana] (75) | | | | /---57--+ \--------------------------------- AA361G00005 [Aethionema arabicum] (61) | | | \---76---+ \------------------------------------------ KFK44718.1 [Arabis alpina] (18) | \-------------------------------------------------- Thhalv10008249m [Eutrema salsugineum] (19) |