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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Species | TF ID | Description |
---|---|---|
Prunus domestica (65) | Pd.00g006900.m01 | NF-YB family protein |
Pd.00g006900.m02 | NF-YB family protein | |
Pd.00g027370.m01 | NF-YB family protein | |
Pd.00g027370.m02 | NF-YB family protein | |
Pd.00g068180.m01 | NF-YB family protein | |
Pd.00g1004490.m01 | NF-YB family protein | |
Pd.00g1004530.m01 | NF-YB family protein | |
Pd.00g1015610.m01 | NF-YB family protein | |
Pd.00g1025930.m01 | NF-YB family protein | |
Pd.00g1030760.m01 | NF-YB family protein | |
Pd.00g1073230.m01 | NF-YB family protein | |
Pd.00g1100430.m01 | NF-YB family protein | |
Pd.00g1100430.m02 | NF-YB family protein | |
Pd.00g1106830.m01 | NF-YB family protein | |
Pd.00g1118650.m01 | NF-YB family protein | |
Pd.00g1161750.m01 | NF-YB family protein | |
Pd.00g1178890.m01 | NF-YB family protein | |
Pd.00g1188160.m01 | NF-YB family protein | |
Pd.00g1191410.m01 | NF-YB family protein | |
Pd.00g1200170.m01 | NF-YB family protein | |
Pd.00g1221720.m01 | NF-YB family protein | |
Pd.00g1248810.m01 | NF-YB family protein | |
Pd.00g1248810.m02 | NF-YB family protein | |
Pd.00g1255940.m01 | NF-YB family protein | |
Pd.00g1264100.m01 | NF-YB family protein | |
Pd.00g1276210.m01 | NF-YB family protein | |
Pd.00g1276260.m01 | NF-YB family protein | |
Pd.00g139120.m01 | NF-YB family protein | |
Pd.00g146190.m01 | NF-YB family protein | |
Pd.00g179550.m01 | NF-YB family protein | |
Pd.00g198460.m01 | NF-YB family protein | |
Pd.00g231620.m01 | NF-YB family protein | |
Pd.00g270910.m01 | NF-YB family protein | |
Pd.00g270980.m01 | NF-YB family protein | |
Pd.00g282250.m01 | NF-YB family protein | |
Pd.00g297610.m01 | NF-YB family protein | |
Pd.00g320090.m01 | NF-YB family protein | |
Pd.00g320140.m01 | NF-YB family protein | |
Pd.00g342800.m01 | NF-YB family protein | |
Pd.00g350530.m01 | NF-YB family protein | |
Pd.00g419530.m01 | NF-YB family protein | |
Pd.00g419530.m02 | NF-YB family protein | |
Pd.00g428060.m01 | NF-YB family protein | |
Pd.00g431840.m01 | NF-YB family protein | |
Pd.00g464950.m01 | NF-YB family protein | |
Pd.00g490760.m01 | NF-YB family protein | |
Pd.00g503640.m01 | NF-YB family protein | |
Pd.00g507250.m01 | NF-YB family protein | |
Pd.00g515840.m01 | NF-YB family protein | |
Pd.00g516110.m01 | NF-YB family protein | |
Pd.00g607630.m01 | NF-YB family protein | |
Pd.00g607630.m02 | NF-YB family protein | |
Pd.00g626630.m01 | NF-YB family protein | |
Pd.00g638620.m01 | NF-YB family protein | |
Pd.00g654470.m01 | NF-YB family protein | |
Pd.00g658940.m01 | NF-YB family protein | |
Pd.00g746020.m01 | NF-YB family protein | |
Pd.00g815840.m01 | NF-YB family protein | |
Pd.00g836040.m01 | NF-YB family protein | |
Pd.00g871790.m01 | NF-YB family protein | |
Pd.00g913990.m01 | NF-YB family protein | |
Pd.00g934050.m01 | NF-YB family protein | |
Pd.00g942630.m01 | NF-YB family protein | |
Pd.00g942720.m01 | NF-YB family protein | |
Pd.00g943670.m01 | NF-YB family protein |
NF-Y transcription factors are likely found in all eukaryotes and have roles in the regulation of diverse genes (McNabb et al., 1995; Edwards et al., 1998; Maity and de Crombrugghe, 1998; Mantovani, 1999). In mammals, where their biochemistry is well described, the NF-Y transcription factor complex is composed of three unique subunits: NF-YA, NF-YB, and NF-YC. Assembly of the NF-Y heterotrimer in mammals follows a strict, stepwise pattern (Sinha et al., 1995, 1996). Initially, a heterodimer is formed in the cytoplasm between the subunits NF-YB and NF-YC. This dimer then translocates to the nucleus, where the third subunit, NF-YA, is recruited to generate the mature, heterotrimeric NF-Y transcription factor (Frontini et al., 2004; Kahle et al., 2005). Mature NF-Y binds promoters with the core pentamer nucleotide sequence CCAAT, and this can result in either positive or negative transcriptional regulation(Peng and Jahroudi, 2002, 2003; Ceribelli et al., 2008).
As with NF-YA, NF-YB and NF-YC families have well-described subunit interaction and DNA-binding domains ( Kim et al., 1996; Sinha et al., 1996; McNabb et al., 1997; Romier et al., 2003). The conserved regions of NF-YB and NF-YC have structural and amino acid homology to histone fold motifs. Specifically, NF-YB is related to the histone fold motifs of H2B histones, while NF-YC subunits are related to H2A histones (Mantovani, 1999).
Siefers N, Dang KK, Kumimoto RW, Bynum WE 4th, Tayrose G, Holt BF 3rd.
Tissue-specific expression patterns of Arabidopsis NF-Y transcription factors suggest potential for extensive combinatorial complexity.
Plant Physiol, 2009. 149(2): p. 625-41.
PMID: 19019982