PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Species | TF ID | Description |
---|---|---|
Vigna radiata (24) | Vradi0007s01250.1 | GATA family protein |
Vradi0153s00520.1 | GATA family protein | |
Vradi0180s00180.1 | GATA family protein | |
Vradi01g11480.1 | GATA family protein | |
Vradi02g02960.1 | GATA family protein | |
Vradi0372s00060.1 | GATA family protein | |
Vradi03g07600.1 | GATA family protein | |
Vradi04g02870.1 | GATA family protein | |
Vradi05g02480.1 | GATA family protein | |
Vradi05g07560.1 | GATA family protein | |
Vradi05g08680.1 | GATA family protein | |
Vradi05g15090.1 | GATA family protein | |
Vradi06g09920.1 | GATA family protein | |
Vradi06g14040.1 | GATA family protein | |
Vradi07g00550.1 | GATA family protein | |
Vradi07g00970.1 | GATA family protein | |
Vradi07g12180.1 | GATA family protein | |
Vradi07g13890.1 | GATA family protein | |
Vradi07g19120.1 | GATA family protein | |
Vradi07g22880.1 | GATA family protein | |
Vradi07g24870.1 | GATA family protein | |
Vradi08g05830.1 | GATA family protein | |
Vradi08g16870.1 | GATA family protein | |
Vradi09g01460.1 | GATA family protein |
GATA factors were first identified as proteins that interact with conserved WGATAR (W = T or A; R = G or A) motifs involved in erythroid-specific gene expressionin vertebrates.
GATA factors are characterised by the presence of conserved, type-IV zinc-finger motifs Animal factors typically contain two C-x2-Cx17-C-x2-C zinc-finger domains. The majority of known fungal GATA factors contain a single C-x2-C-x17-C-x2-C finger with greatest similarity to the carboxyl (C) terminal finger of animal GATA factors.Several examples of fungal GATA factors containing a variant C-x2-C-x18-C-x2-C DNA-binding domain are also known.
Examples of both C-x2-C-x17-Cx2-C (Type IVa) and C-x2-C-x18-C-x2-C (Type IVb) GATA factors are found within fungi; animals onlycontain the former configuration, and plants only the latter. Plant GATA factors typically contain a single zinc finger. The Arabidopsis type-IV zinc-finger proteins may represent the previously defined family of nuclear GATA-binding proteins implicated in light-responsive transcription.
Teakle GR, Manfield IW, Graham JF, Gilmartin PM.
Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics.
Plant Mol Biol. 2002 Sep;50(1):43-57.
PMID: 12139008