PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Species | TF ID | Description |
---|---|---|
Cannabis sativa (21) | PK01325.1 | GATA family protein |
PK04189.1 | GATA family protein | |
PK04210.1 | GATA family protein | |
PK07315.1 | GATA family protein | |
PK07315.2 | GATA family protein | |
PK07593.1 | GATA family protein | |
PK10122.2 | GATA family protein | |
PK10122.3 | GATA family protein | |
PK10122.4 | GATA family protein | |
PK10122.5 | GATA family protein | |
PK10122.6 | GATA family protein | |
PK11000.1 | GATA family protein | |
PK11095.1 | GATA family protein | |
PK13609.1 | GATA family protein | |
PK13647.1 | GATA family protein | |
PK17763.1 | GATA family protein | |
PK18657.1 | GATA family protein | |
PK18820.1 | GATA family protein | |
PK21934.1 | GATA family protein | |
PK22222.1 | GATA family protein | |
PK24471.1 | GATA family protein |
GATA factors were first identified as proteins that interact with conserved WGATAR (W = T or A; R = G or A) motifs involved in erythroid-specific gene expressionin vertebrates.
GATA factors are characterised by the presence of conserved, type-IV zinc-finger motifs Animal factors typically contain two C-x2-Cx17-C-x2-C zinc-finger domains. The majority of known fungal GATA factors contain a single C-x2-C-x17-C-x2-C finger with greatest similarity to the carboxyl (C) terminal finger of animal GATA factors.Several examples of fungal GATA factors containing a variant C-x2-C-x18-C-x2-C DNA-binding domain are also known.
Examples of both C-x2-C-x17-Cx2-C (Type IVa) and C-x2-C-x18-C-x2-C (Type IVb) GATA factors are found within fungi; animals onlycontain the former configuration, and plants only the latter. Plant GATA factors typically contain a single zinc finger. The Arabidopsis type-IV zinc-finger proteins may represent the previously defined family of nuclear GATA-binding proteins implicated in light-responsive transcription.
Teakle GR, Manfield IW, Graham JF, Gilmartin PM.
Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics.
Plant Mol Biol. 2002 Sep;50(1):43-57.
PMID: 12139008