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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Species | TF ID | Description |
---|---|---|
Lotus japonicus (26) | Lj0g3v0122049.1 | NF-YB family protein |
Lj0g3v0122049.2 | NF-YB family protein | |
Lj0g3v0122049.3 | NF-YB family protein | |
Lj0g3v0173119.1 | NF-YB family protein | |
Lj0g3v0173119.2 | NF-YB family protein | |
Lj0g3v0209729.1 | NF-YB family protein | |
Lj0g3v0313589.1 | NF-YB family protein | |
Lj0g3v0326419.1 | NF-YB family protein | |
Lj1g3v4579030.1 | NF-YB family protein | |
Lj2g3v2087990.1 | NF-YB family protein | |
Lj2g3v3291390.1 | NF-YB family protein | |
Lj3g3v2994480.1 | NF-YB family protein | |
Lj4g3v0109410.1 | NF-YB family protein | |
Lj4g3v1774670.1 | NF-YB family protein | |
Lj4g3v1774670.2 | NF-YB family protein | |
Lj4g3v2365210.1 | NF-YB family protein | |
Lj4g3v2799410.1 | NF-YB family protein | |
Lj4g3v2825520.1 | NF-YB family protein | |
Lj5g3v0616270.1 | NF-YB family protein | |
Lj5g3v1654150.1 | NF-YB family protein | |
Lj6g3v0753150.1 | NF-YB family protein | |
Lj6g3v0758870.1 | NF-YB family protein | |
Lj6g3v1584620.1 | NF-YB family protein | |
Lj6g3v1720580.1 | NF-YB family protein | |
Lj6g3v1720580.2 | NF-YB family protein | |
Lj6g3v1720580.3 | NF-YB family protein |
NF-Y transcription factors are likely found in all eukaryotes and have roles in the regulation of diverse genes (McNabb et al., 1995; Edwards et al., 1998; Maity and de Crombrugghe, 1998; Mantovani, 1999). In mammals, where their biochemistry is well described, the NF-Y transcription factor complex is composed of three unique subunits: NF-YA, NF-YB, and NF-YC. Assembly of the NF-Y heterotrimer in mammals follows a strict, stepwise pattern (Sinha et al., 1995, 1996). Initially, a heterodimer is formed in the cytoplasm between the subunits NF-YB and NF-YC. This dimer then translocates to the nucleus, where the third subunit, NF-YA, is recruited to generate the mature, heterotrimeric NF-Y transcription factor (Frontini et al., 2004; Kahle et al., 2005). Mature NF-Y binds promoters with the core pentamer nucleotide sequence CCAAT, and this can result in either positive or negative transcriptional regulation(Peng and Jahroudi, 2002, 2003; Ceribelli et al., 2008).
As with NF-YA, NF-YB and NF-YC families have well-described subunit interaction and DNA-binding domains ( Kim et al., 1996; Sinha et al., 1996; McNabb et al., 1997; Romier et al., 2003). The conserved regions of NF-YB and NF-YC have structural and amino acid homology to histone fold motifs. Specifically, NF-YB is related to the histone fold motifs of H2B histones, while NF-YC subunits are related to H2A histones (Mantovani, 1999).
Siefers N, Dang KK, Kumimoto RW, Bynum WE 4th, Tayrose G, Holt BF 3rd.
Tissue-specific expression patterns of Arabidopsis NF-Y transcription factors suggest potential for extensive combinatorial complexity.
Plant Physiol, 2009. 149(2): p. 625-41.
PMID: 19019982