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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Species | TF ID | Description |
---|---|---|
Juglans regia (24) | WALNUT_00000212-RA | NF-YB family protein |
WALNUT_00001288-RA | NF-YB family protein | |
WALNUT_00002989-RA | NF-YB family protein | |
WALNUT_00002996-RA | NF-YB family protein | |
WALNUT_00003522-RA | NF-YB family protein | |
WALNUT_00005387-RA | NF-YB family protein | |
WALNUT_00013191-RA | NF-YB family protein | |
WALNUT_00014664-RA | NF-YB family protein | |
WALNUT_00014943-RA | NF-YB family protein | |
WALNUT_00016437-RA | NF-YB family protein | |
WALNUT_00016968-RA | NF-YB family protein | |
WALNUT_00017504-RA | NF-YB family protein | |
WALNUT_00018370-RA | NF-YB family protein | |
WALNUT_00018444-RA | NF-YB family protein | |
WALNUT_00019528-RA | NF-YB family protein | |
WALNUT_00021570-RA | NF-YB family protein | |
WALNUT_00021573-RA | NF-YB family protein | |
WALNUT_00022556-RA | NF-YB family protein | |
WALNUT_00024310-RA | NF-YB family protein | |
WALNUT_00024889-RA | NF-YB family protein | |
WALNUT_00025131-RA | NF-YB family protein | |
WALNUT_00029516-RA | NF-YB family protein | |
WALNUT_00030171-RA | NF-YB family protein | |
WALNUT_00030998-RA | NF-YB family protein |
NF-Y transcription factors are likely found in all eukaryotes and have roles in the regulation of diverse genes (McNabb et al., 1995; Edwards et al., 1998; Maity and de Crombrugghe, 1998; Mantovani, 1999). In mammals, where their biochemistry is well described, the NF-Y transcription factor complex is composed of three unique subunits: NF-YA, NF-YB, and NF-YC. Assembly of the NF-Y heterotrimer in mammals follows a strict, stepwise pattern (Sinha et al., 1995, 1996). Initially, a heterodimer is formed in the cytoplasm between the subunits NF-YB and NF-YC. This dimer then translocates to the nucleus, where the third subunit, NF-YA, is recruited to generate the mature, heterotrimeric NF-Y transcription factor (Frontini et al., 2004; Kahle et al., 2005). Mature NF-Y binds promoters with the core pentamer nucleotide sequence CCAAT, and this can result in either positive or negative transcriptional regulation(Peng and Jahroudi, 2002, 2003; Ceribelli et al., 2008).
As with NF-YA, NF-YB and NF-YC families have well-described subunit interaction and DNA-binding domains ( Kim et al., 1996; Sinha et al., 1996; McNabb et al., 1997; Romier et al., 2003). The conserved regions of NF-YB and NF-YC have structural and amino acid homology to histone fold motifs. Specifically, NF-YB is related to the histone fold motifs of H2B histones, while NF-YC subunits are related to H2A histones (Mantovani, 1999).
Siefers N, Dang KK, Kumimoto RW, Bynum WE 4th, Tayrose G, Holt BF 3rd.
Tissue-specific expression patterns of Arabidopsis NF-Y transcription factors suggest potential for extensive combinatorial complexity.
Plant Physiol, 2009. 149(2): p. 625-41.
PMID: 19019982