![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Species | TF ID | Description |
---|---|---|
Zostera marina (24) | Zosma115g00120.1 | GATA family protein |
Zosma122g00810.1 | GATA family protein | |
Zosma134g00070.1 | GATA family protein | |
Zosma140g00360.1 | GATA family protein | |
Zosma162g00190.1 | GATA family protein | |
Zosma176g00400.1 | GATA family protein | |
Zosma19g00510.1 | GATA family protein | |
Zosma1g01560.1 | GATA family protein | |
Zosma200g00150.1 | GATA family protein | |
Zosma20g00430.1 | GATA family protein | |
Zosma24g01490.1 | GATA family protein | |
Zosma2g01860.1 | GATA family protein | |
Zosma2g03660.1 | GATA family protein | |
Zosma30g00520.1 | GATA family protein | |
Zosma34g00120.1 | GATA family protein | |
Zosma355g00020.1 | GATA family protein | |
Zosma36g00040.1 | GATA family protein | |
Zosma39g00110.1 | GATA family protein | |
Zosma44g00820.1 | GATA family protein | |
Zosma47g00320.1 | GATA family protein | |
Zosma581g00010.1 | GATA family protein | |
Zosma5g01940.1 | GATA family protein | |
Zosma68g00130.1 | GATA family protein | |
Zosma85g00390.1 | GATA family protein |
GATA factors were first identified as proteins that interact with conserved WGATAR (W = T or A; R = G or A) motifs involved in erythroid-specific gene expressionin vertebrates.
GATA factors are characterised by the presence of conserved, type-IV zinc-finger motifs Animal factors typically contain two C-x2-Cx17-C-x2-C zinc-finger domains. The majority of known fungal GATA factors contain a single C-x2-C-x17-C-x2-C finger with greatest similarity to the carboxyl (C) terminal finger of animal GATA factors.Several examples of fungal GATA factors containing a variant C-x2-C-x18-C-x2-C DNA-binding domain are also known.
Examples of both C-x2-C-x17-Cx2-C (Type IVa) and C-x2-C-x18-C-x2-C (Type IVb) GATA factors are found within fungi; animals onlycontain the former configuration, and plants only the latter. Plant GATA factors typically contain a single zinc finger. The Arabidopsis type-IV zinc-finger proteins may represent the previously defined family of nuclear GATA-binding proteins implicated in light-responsive transcription.
Teakle GR, Manfield IW, Graham JF, Gilmartin PM.
Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics.
Plant Mol Biol. 2002 Sep;50(1):43-57.
PMID: 12139008