![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Species | TF ID | Description |
---|---|---|
Setaria viridis (39) | Sevir.1G034500.1.p | GATA family protein |
Sevir.1G034500.2.p | GATA family protein | |
Sevir.1G102800.1.p | GATA family protein | |
Sevir.1G257100.1.p | GATA family protein | |
Sevir.1G364800.1.p | GATA family protein | |
Sevir.1G364800.2.p | GATA family protein | |
Sevir.1G364800.3.p | GATA family protein | |
Sevir.3G136200.1.p | GATA family protein | |
Sevir.3G144900.1.p | GATA family protein | |
Sevir.3G179100.1.p | GATA family protein | |
Sevir.3G415200.1.p | GATA family protein | |
Sevir.4G246900.1.p | GATA family protein | |
Sevir.4G256600.1.p | GATA family protein | |
Sevir.4G256600.2.p | GATA family protein | |
Sevir.5G160600.1.p | GATA family protein | |
Sevir.5G262800.1.p | GATA family protein | |
Sevir.5G318000.1.p | GATA family protein | |
Sevir.5G476600.1.p | GATA family protein | |
Sevir.7G157300.1.p | GATA family protein | |
Sevir.7G157300.2.p | GATA family protein | |
Sevir.7G157500.1.p | GATA family protein | |
Sevir.7G157500.2.p | GATA family protein | |
Sevir.7G157500.3.p | GATA family protein | |
Sevir.7G193800.1.p | GATA family protein | |
Sevir.7G197100.1.p | GATA family protein | |
Sevir.7G197100.2.p | GATA family protein | |
Sevir.7G279100.1.p | GATA family protein | |
Sevir.7G302600.1.p | GATA family protein | |
Sevir.7G302700.1.p | GATA family protein | |
Sevir.8G064300.1.p | GATA family protein | |
Sevir.8G169600.1.p | GATA family protein | |
Sevir.9G024700.1.p | GATA family protein | |
Sevir.9G101100.1.p | GATA family protein | |
Sevir.9G136800.1.p | GATA family protein | |
Sevir.9G231900.1.p | GATA family protein | |
Sevir.9G232100.1.p | GATA family protein | |
Sevir.9G331200.1.p | GATA family protein | |
Sevir.9G332100.1.p | GATA family protein | |
Sevir.9G546700.1.p | GATA family protein |
GATA factors were first identified as proteins that interact with conserved WGATAR (W = T or A; R = G or A) motifs involved in erythroid-specific gene expressionin vertebrates.
GATA factors are characterised by the presence of conserved, type-IV zinc-finger motifs Animal factors typically contain two C-x2-Cx17-C-x2-C zinc-finger domains. The majority of known fungal GATA factors contain a single C-x2-C-x17-C-x2-C finger with greatest similarity to the carboxyl (C) terminal finger of animal GATA factors.Several examples of fungal GATA factors containing a variant C-x2-C-x18-C-x2-C DNA-binding domain are also known.
Examples of both C-x2-C-x17-Cx2-C (Type IVa) and C-x2-C-x18-C-x2-C (Type IVb) GATA factors are found within fungi; animals onlycontain the former configuration, and plants only the latter. Plant GATA factors typically contain a single zinc finger. The Arabidopsis type-IV zinc-finger proteins may represent the previously defined family of nuclear GATA-binding proteins implicated in light-responsive transcription.
Teakle GR, Manfield IW, Graham JF, Gilmartin PM.
Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics.
Plant Mol Biol. 2002 Sep;50(1):43-57.
PMID: 12139008