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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Species | TF ID | Description |
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Sisymbrium irio (28) | 676710040 | GATA family protein |
676710578 | GATA family protein | |
676714660 | GATA family protein | |
676720768 | GATA family protein | |
676721034 | GATA family protein | |
676721096 | GATA family protein | |
676727568 | GATA family protein | |
676728394 | GATA family protein | |
676735094 | GATA family protein | |
676738284 | GATA family protein | |
676739150 | GATA family protein | |
676745398 | GATA family protein | |
676745426 | GATA family protein | |
676745668 | GATA family protein | |
676745902 | GATA family protein | |
676746026 | GATA family protein | |
676749390 | GATA family protein | |
676750136 | GATA family protein | |
676752220 | GATA family protein | |
676763598 | GATA family protein | |
676767426 | GATA family protein | |
676774550 | GATA family protein | |
676776966 | GATA family protein | |
676780836 | GATA family protein | |
676780856 | GATA family protein | |
676782028 | GATA family protein | |
676782350 | GATA family protein | |
676794078 | GATA family protein |
GATA factors were first identified as proteins that interact with conserved WGATAR (W = T or A; R = G or A) motifs involved in erythroid-specific gene expressionin vertebrates.
GATA factors are characterised by the presence of conserved, type-IV zinc-finger motifs Animal factors typically contain two C-x2-Cx17-C-x2-C zinc-finger domains. The majority of known fungal GATA factors contain a single C-x2-C-x17-C-x2-C finger with greatest similarity to the carboxyl (C) terminal finger of animal GATA factors.Several examples of fungal GATA factors containing a variant C-x2-C-x18-C-x2-C DNA-binding domain are also known.
Examples of both C-x2-C-x17-Cx2-C (Type IVa) and C-x2-C-x18-C-x2-C (Type IVb) GATA factors are found within fungi; animals onlycontain the former configuration, and plants only the latter. Plant GATA factors typically contain a single zinc finger. The Arabidopsis type-IV zinc-finger proteins may represent the previously defined family of nuclear GATA-binding proteins implicated in light-responsive transcription.
Teakle GR, Manfield IW, Graham JF, Gilmartin PM.
Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics.
Plant Mol Biol. 2002 Sep;50(1):43-57.
PMID: 12139008