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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Species | TF ID | Description |
---|---|---|
Sphagnum fallax (35) | Sphfalx0000s0457.1.p | GATA family protein |
Sphfalx0006s0098.1.p | GATA family protein | |
Sphfalx0010s0041.1.p | GATA family protein | |
Sphfalx0011s0027.1.p | GATA family protein | |
Sphfalx0011s0027.2.p | GATA family protein | |
Sphfalx0013s0065.1.p | GATA family protein | |
Sphfalx0013s0065.2.p | GATA family protein | |
Sphfalx0013s0065.3.p | GATA family protein | |
Sphfalx0013s0065.4.p | GATA family protein | |
Sphfalx0024s0013.1.p | GATA family protein | |
Sphfalx0034s0003.1.p | GATA family protein | |
Sphfalx0036s0042.1.p | GATA family protein | |
Sphfalx0036s0042.10.p | GATA family protein | |
Sphfalx0036s0042.2.p | GATA family protein | |
Sphfalx0036s0042.3.p | GATA family protein | |
Sphfalx0036s0042.4.p | GATA family protein | |
Sphfalx0036s0042.5.p | GATA family protein | |
Sphfalx0036s0042.6.p | GATA family protein | |
Sphfalx0036s0042.7.p | GATA family protein | |
Sphfalx0036s0042.8.p | GATA family protein | |
Sphfalx0036s0042.9.p | GATA family protein | |
Sphfalx0043s0114.1.p | GATA family protein | |
Sphfalx0043s0114.2.p | GATA family protein | |
Sphfalx0043s0114.3.p | GATA family protein | |
Sphfalx0043s0114.4.p | GATA family protein | |
Sphfalx0044s0048.1.p | GATA family protein | |
Sphfalx0110s0015.1.p | GATA family protein | |
Sphfalx0138s0008.1.p | GATA family protein | |
Sphfalx0157s0023.1.p | GATA family protein | |
Sphfalx0157s0023.3.p | GATA family protein | |
Sphfalx0169s0018.1.p | GATA family protein | |
Sphfalx0169s0018.2.p | GATA family protein | |
Sphfalx0169s0018.3.p | GATA family protein | |
Sphfalx0169s0018.4.p | GATA family protein | |
Sphfalx0244s0009.1.p | GATA family protein |
GATA factors were first identified as proteins that interact with conserved WGATAR (W = T or A; R = G or A) motifs involved in erythroid-specific gene expressionin vertebrates.
GATA factors are characterised by the presence of conserved, type-IV zinc-finger motifs Animal factors typically contain two C-x2-Cx17-C-x2-C zinc-finger domains. The majority of known fungal GATA factors contain a single C-x2-C-x17-C-x2-C finger with greatest similarity to the carboxyl (C) terminal finger of animal GATA factors.Several examples of fungal GATA factors containing a variant C-x2-C-x18-C-x2-C DNA-binding domain are also known.
Examples of both C-x2-C-x17-Cx2-C (Type IVa) and C-x2-C-x18-C-x2-C (Type IVb) GATA factors are found within fungi; animals onlycontain the former configuration, and plants only the latter. Plant GATA factors typically contain a single zinc finger. The Arabidopsis type-IV zinc-finger proteins may represent the previously defined family of nuclear GATA-binding proteins implicated in light-responsive transcription.
Teakle GR, Manfield IW, Graham JF, Gilmartin PM.
Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics.
Plant Mol Biol. 2002 Sep;50(1):43-57.
PMID: 12139008