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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Species | TF ID | Description |
---|---|---|
RrC1037_p1 | GATA family protein | |
RrC10994_p1 | GATA family protein | |
RrC1106_p1 | GATA family protein | |
RrC11093_p1 | GATA family protein | |
RrC1110_p4 | GATA family protein | |
RrC11643_p1 | GATA family protein | |
RrC11754_p1 | GATA family protein | |
RrC1181_p3 | GATA family protein | |
RrC12158_p1 | GATA family protein | |
RrC12312_p1 | GATA family protein | |
RrC12550_p1 | GATA family protein | |
RrC12599_p1 | GATA family protein | |
RrC12882_p1 | GATA family protein | |
RrC14297_p1 | GATA family protein | |
RrC1448_p1 | GATA family protein | |
RrC14786_p2 | GATA family protein | |
RrC1497_p1 | GATA family protein | |
RrC1635_p2 | GATA family protein | |
RrC1711_p1 | GATA family protein | |
RrC1846_p1 | GATA family protein | |
RrC18592_p1 | GATA family protein | |
RrC1961_p4 | GATA family protein | |
RrC2183_p3 | GATA family protein | |
RrC22956_p1 | GATA family protein | |
RrC23258_p1 | GATA family protein | |
RrC27316_p1 | GATA family protein | |
RrC28482_p1 | GATA family protein | |
RrC302_p4 | GATA family protein | |
RrC32435_p1 | GATA family protein | |
RrC3297_p1 | GATA family protein | |
RrC3451_p1 | GATA family protein | |
RrC3531_p3 | GATA family protein | |
RrC363_p6 | GATA family protein | |
RrC3653_p2 | GATA family protein | |
RrC378_p6 | GATA family protein | |
RrC3834_p4 | GATA family protein | |
RrC417_p8 | GATA family protein | |
RrC4620_p2 | GATA family protein | |
RrC4933_p3 | GATA family protein | |
RrC4986_p1 | GATA family protein | |
RrC5018_p2 | GATA family protein | |
RrC518_p3 | GATA family protein | |
RrC5531_p1 | GATA family protein | |
RrC6142_p4 | GATA family protein | |
RrC6672_p1 | GATA family protein | |
RrC6736_p1 | GATA family protein | |
RrC6772_p3 | GATA family protein | |
RrC680_p1 | GATA family protein | |
RrC7393_p1 | GATA family protein | |
RrC760_p3 | GATA family protein | |
RrC7_p6 | GATA family protein | |
RrC8004_p3 | GATA family protein | |
RrC8771_p1 | GATA family protein | |
RrC9027_p1 | GATA family protein | |
RrC9192_p1 | GATA family protein | |
RrC953_p1 | GATA family protein | |
RrC9887_p2 | GATA family protein |
GATA factors were first identified as proteins that interact with conserved WGATAR (W = T or A; R = G or A) motifs involved in erythroid-specific gene expressionin vertebrates.
GATA factors are characterised by the presence of conserved, type-IV zinc-finger motifs Animal factors typically contain two C-x2-Cx17-C-x2-C zinc-finger domains. The majority of known fungal GATA factors contain a single C-x2-C-x17-C-x2-C finger with greatest similarity to the carboxyl (C) terminal finger of animal GATA factors.Several examples of fungal GATA factors containing a variant C-x2-C-x18-C-x2-C DNA-binding domain are also known.
Examples of both C-x2-C-x17-Cx2-C (Type IVa) and C-x2-C-x18-C-x2-C (Type IVb) GATA factors are found within fungi; animals onlycontain the former configuration, and plants only the latter. Plant GATA factors typically contain a single zinc finger. The Arabidopsis type-IV zinc-finger proteins may represent the previously defined family of nuclear GATA-binding proteins implicated in light-responsive transcription.
Teakle GR, Manfield IW, Graham JF, Gilmartin PM.
Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics.
Plant Mol Biol. 2002 Sep;50(1):43-57.
PMID: 12139008