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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Species | TF ID | Description |
---|---|---|
Ricinus communis (19) | 27494.m000044 | GATA family protein |
27538.m000326 | GATA family protein | |
27940.m000323 | GATA family protein | |
28035.m000366 | GATA family protein | |
29596.m000719 | GATA family protein | |
29596.m000720 | GATA family protein | |
29634.m002055 | GATA family protein | |
29634.m002146 | GATA family protein | |
29794.m003323 | GATA family protein | |
29838.m001723 | GATA family protein | |
29838.m001724 | GATA family protein | |
29889.m003248 | GATA family protein | |
29904.m003012 | GATA family protein | |
29912.m005322 | GATA family protein | |
30076.m004701 | GATA family protein | |
30128.m008883 | GATA family protein | |
30131.m007120 | GATA family protein | |
30146.m003524 | GATA family protein | |
30174.m008809 | GATA family protein |
GATA factors were first identified as proteins that interact with conserved WGATAR (W = T or A; R = G or A) motifs involved in erythroid-specific gene expressionin vertebrates.
GATA factors are characterised by the presence of conserved, type-IV zinc-finger motifs Animal factors typically contain two C-x2-Cx17-C-x2-C zinc-finger domains. The majority of known fungal GATA factors contain a single C-x2-C-x17-C-x2-C finger with greatest similarity to the carboxyl (C) terminal finger of animal GATA factors.Several examples of fungal GATA factors containing a variant C-x2-C-x18-C-x2-C DNA-binding domain are also known.
Examples of both C-x2-C-x17-Cx2-C (Type IVa) and C-x2-C-x18-C-x2-C (Type IVb) GATA factors are found within fungi; animals onlycontain the former configuration, and plants only the latter. Plant GATA factors typically contain a single zinc finger. The Arabidopsis type-IV zinc-finger proteins may represent the previously defined family of nuclear GATA-binding proteins implicated in light-responsive transcription.
Teakle GR, Manfield IW, Graham JF, Gilmartin PM.
Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics.
Plant Mol Biol. 2002 Sep;50(1):43-57.
PMID: 12139008