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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Species | TF ID | Description |
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PDK_30s1033711g010 | GATA family protein | |
PDK_30s1049951g004 | GATA family protein | |
PDK_30s1080591g003 | GATA family protein | |
PDK_30s1109201g004 | GATA family protein | |
PDK_30s1133641g001 | GATA family protein | |
PDK_30s1203181g001 | GATA family protein | |
PDK_30s654821g001 | GATA family protein | |
PDK_30s6550969g005 | GATA family protein | |
PDK_30s667491g001 | GATA family protein | |
PDK_30s680911g001 | GATA family protein | |
PDK_30s707401g001 | GATA family protein | |
PDK_30s738451g003 | GATA family protein | |
PDK_30s779741g003 | GATA family protein | |
PDK_30s809091g002 | GATA family protein | |
PDK_30s823181g001 | GATA family protein | |
PDK_30s847891g001 | GATA family protein | |
PDK_30s854491g001 | GATA family protein | |
PDK_30s857931g001 | GATA family protein | |
PDK_30s969931g003 | GATA family protein |
GATA factors were first identified as proteins that interact with conserved WGATAR (W = T or A; R = G or A) motifs involved in erythroid-specific gene expressionin vertebrates.
GATA factors are characterised by the presence of conserved, type-IV zinc-finger motifs Animal factors typically contain two C-x2-Cx17-C-x2-C zinc-finger domains. The majority of known fungal GATA factors contain a single C-x2-C-x17-C-x2-C finger with greatest similarity to the carboxyl (C) terminal finger of animal GATA factors.Several examples of fungal GATA factors containing a variant C-x2-C-x18-C-x2-C DNA-binding domain are also known.
Examples of both C-x2-C-x17-Cx2-C (Type IVa) and C-x2-C-x18-C-x2-C (Type IVb) GATA factors are found within fungi; animals onlycontain the former configuration, and plants only the latter. Plant GATA factors typically contain a single zinc finger. The Arabidopsis type-IV zinc-finger proteins may represent the previously defined family of nuclear GATA-binding proteins implicated in light-responsive transcription.
Teakle GR, Manfield IW, Graham JF, Gilmartin PM.
Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics.
Plant Mol Biol. 2002 Sep;50(1):43-57.
PMID: 12139008