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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Species | TF ID | Description |
---|---|---|
Oryza glaberrima (23) | ORGLA01G0118700.1 | GATA family protein |
ORGLA01G0208300.1 | GATA family protein | |
ORGLA01G0250200.1 | GATA family protein | |
ORGLA01G0395900.1 | GATA family protein | |
ORGLA01G0401200.1 | GATA family protein | |
ORGLA02G0035000.1 | GATA family protein | |
ORGLA02G0221200.1 | GATA family protein | |
ORGLA02G0317800.1 | GATA family protein | |
ORGLA03G0022100.1 | GATA family protein | |
ORGLA03G0032900.1 | GATA family protein | |
ORGLA03G0301600.1 | GATA family protein | |
ORGLA04G0175700.1 | GATA family protein | |
ORGLA05G0036200.1 | GATA family protein | |
ORGLA05G0202900.1 | GATA family protein | |
ORGLA05G0226400.1 | GATA family protein | |
ORGLA05G0233700.1 | GATA family protein | |
ORGLA06G0158200.1 | GATA family protein | |
ORGLA06G0219100.1 | GATA family protein | |
ORGLA10G0109200.1 | GATA family protein | |
ORGLA10G0133700.1 | GATA family protein | |
ORGLA11G0198500.1 | GATA family protein | |
ORGLA12G0039500.1 | GATA family protein | |
ORGLA12G0166900.1 | GATA family protein |
GATA factors were first identified as proteins that interact with conserved WGATAR (W = T or A; R = G or A) motifs involved in erythroid-specific gene expressionin vertebrates.
GATA factors are characterised by the presence of conserved, type-IV zinc-finger motifs Animal factors typically contain two C-x2-Cx17-C-x2-C zinc-finger domains. The majority of known fungal GATA factors contain a single C-x2-C-x17-C-x2-C finger with greatest similarity to the carboxyl (C) terminal finger of animal GATA factors.Several examples of fungal GATA factors containing a variant C-x2-C-x18-C-x2-C DNA-binding domain are also known.
Examples of both C-x2-C-x17-Cx2-C (Type IVa) and C-x2-C-x18-C-x2-C (Type IVb) GATA factors are found within fungi; animals onlycontain the former configuration, and plants only the latter. Plant GATA factors typically contain a single zinc finger. The Arabidopsis type-IV zinc-finger proteins may represent the previously defined family of nuclear GATA-binding proteins implicated in light-responsive transcription.
Teakle GR, Manfield IW, Graham JF, Gilmartin PM.
Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics.
Plant Mol Biol. 2002 Sep;50(1):43-57.
PMID: 12139008