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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Species | TF ID | Description |
---|---|---|
Nelumbo nucifera (34) | NNU_002936-RA | GATA family protein |
NNU_003395-RA | GATA family protein | |
NNU_005714-RA | GATA family protein | |
NNU_006235-RA | GATA family protein | |
NNU_006236-RA | GATA family protein | |
NNU_006392-RA | GATA family protein | |
NNU_007991-RA | GATA family protein | |
NNU_008123-RA | GATA family protein | |
NNU_008703-RA | GATA family protein | |
NNU_008823-RA | GATA family protein | |
NNU_009116-RA | GATA family protein | |
NNU_010791-RA | GATA family protein | |
NNU_011742-RA | GATA family protein | |
NNU_011863-RA | GATA family protein | |
NNU_011942-RA | GATA family protein | |
NNU_012142-RA | GATA family protein | |
NNU_012368-RA | GATA family protein | |
NNU_012983-RA | GATA family protein | |
NNU_013980-RA | GATA family protein | |
NNU_014536-RA | GATA family protein | |
NNU_014961-RA | GATA family protein | |
NNU_015008-RA | GATA family protein | |
NNU_015884-RA | GATA family protein | |
NNU_016616-RA | GATA family protein | |
NNU_018734-RA | GATA family protein | |
NNU_019810-RA | GATA family protein | |
NNU_019930-RA | GATA family protein | |
NNU_020581-RA | GATA family protein | |
NNU_020582-RA | GATA family protein | |
NNU_021835-RA | GATA family protein | |
NNU_022979-RA | GATA family protein | |
NNU_024962-RA | GATA family protein | |
NNU_025260-RA | GATA family protein | |
NNU_026067-RA | GATA family protein |
GATA factors were first identified as proteins that interact with conserved WGATAR (W = T or A; R = G or A) motifs involved in erythroid-specific gene expressionin vertebrates.
GATA factors are characterised by the presence of conserved, type-IV zinc-finger motifs Animal factors typically contain two C-x2-Cx17-C-x2-C zinc-finger domains. The majority of known fungal GATA factors contain a single C-x2-C-x17-C-x2-C finger with greatest similarity to the carboxyl (C) terminal finger of animal GATA factors.Several examples of fungal GATA factors containing a variant C-x2-C-x18-C-x2-C DNA-binding domain are also known.
Examples of both C-x2-C-x17-Cx2-C (Type IVa) and C-x2-C-x18-C-x2-C (Type IVb) GATA factors are found within fungi; animals onlycontain the former configuration, and plants only the latter. Plant GATA factors typically contain a single zinc finger. The Arabidopsis type-IV zinc-finger proteins may represent the previously defined family of nuclear GATA-binding proteins implicated in light-responsive transcription.
Teakle GR, Manfield IW, Graham JF, Gilmartin PM.
Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics.
Plant Mol Biol. 2002 Sep;50(1):43-57.
PMID: 12139008