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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Species | TF ID | Description |
---|---|---|
Leersia perrieri (33) | LPERR01G13070.1 | GATA family protein |
LPERR01G13070.2 | GATA family protein | |
LPERR01G21790.1 | GATA family protein | |
LPERR01G26240.1 | GATA family protein | |
LPERR02G03330.2 | GATA family protein | |
LPERR02G03330.3 | GATA family protein | |
LPERR02G03330.4 | GATA family protein | |
LPERR02G03330.5 | GATA family protein | |
LPERR02G03330.6 | GATA family protein | |
LPERR02G03330.7 | GATA family protein | |
LPERR02G07780.1 | GATA family protein | |
LPERR02G30140.1 | GATA family protein | |
LPERR02G30140.2 | GATA family protein | |
LPERR03G02230.1 | GATA family protein | |
LPERR03G05310.1 | GATA family protein | |
LPERR03G24620.1 | GATA family protein | |
LPERR03G33900.1 | GATA family protein | |
LPERR04G11580.1 | GATA family protein | |
LPERR04G16350.1 | GATA family protein | |
LPERR04G16350.2 | GATA family protein | |
LPERR04G16610.1 | GATA family protein | |
LPERR05G19030.1 | GATA family protein | |
LPERR05G21780.1 | GATA family protein | |
LPERR05G22620.1 | GATA family protein | |
LPERR06G15680.1 | GATA family protein | |
LPERR06G21800.1 | GATA family protein | |
LPERR07G19250.1 | GATA family protein | |
LPERR10G08960.1 | GATA family protein | |
LPERR10G14090.1 | GATA family protein | |
LPERR11G04840.1 | GATA family protein | |
LPERR11G14110.1 | GATA family protein | |
LPERR12G03840.1 | GATA family protein | |
LPERR12G15460.1 | GATA family protein |
GATA factors were first identified as proteins that interact with conserved WGATAR (W = T or A; R = G or A) motifs involved in erythroid-specific gene expressionin vertebrates.
GATA factors are characterised by the presence of conserved, type-IV zinc-finger motifs Animal factors typically contain two C-x2-Cx17-C-x2-C zinc-finger domains. The majority of known fungal GATA factors contain a single C-x2-C-x17-C-x2-C finger with greatest similarity to the carboxyl (C) terminal finger of animal GATA factors.Several examples of fungal GATA factors containing a variant C-x2-C-x18-C-x2-C DNA-binding domain are also known.
Examples of both C-x2-C-x17-Cx2-C (Type IVa) and C-x2-C-x18-C-x2-C (Type IVb) GATA factors are found within fungi; animals onlycontain the former configuration, and plants only the latter. Plant GATA factors typically contain a single zinc finger. The Arabidopsis type-IV zinc-finger proteins may represent the previously defined family of nuclear GATA-binding proteins implicated in light-responsive transcription.
Teakle GR, Manfield IW, Graham JF, Gilmartin PM.
Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics.
Plant Mol Biol. 2002 Sep;50(1):43-57.
PMID: 12139008