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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Species | TF ID | Description |
---|---|---|
Lotus japonicus (27) | Lj0g3v0097299.1 | GATA family protein |
Lj0g3v0164269.1 | GATA family protein | |
Lj0g3v0167569.1 | GATA family protein | |
Lj0g3v0196689.1 | GATA family protein | |
Lj0g3v0224429.1 | GATA family protein | |
Lj0g3v0273489.1 | GATA family protein | |
Lj0g3v0273489.2 | GATA family protein | |
Lj1g3v0162600.1 | GATA family protein | |
Lj1g3v1537660.1 | GATA family protein | |
Lj1g3v2069900.1 | GATA family protein | |
Lj1g3v3964520.1 | GATA family protein | |
Lj1g3v3964530.1 | GATA family protein | |
Lj2g3v1757260.1 | GATA family protein | |
Lj2g3v1989050.1 | GATA family protein | |
Lj3g3v1075120.1 | GATA family protein | |
Lj3g3v2057510.1 | GATA family protein | |
Lj3g3v2315420.1 | GATA family protein | |
Lj3g3v2315420.2 | GATA family protein | |
Lj3g3v2315420.3 | GATA family protein | |
Lj3g3v3386580.1 | GATA family protein | |
Lj4g3v0386050.1 | GATA family protein | |
Lj4g3v1010080.1 | GATA family protein | |
Lj4g3v2140320.1 | GATA family protein | |
Lj5g3v0404820.1 | GATA family protein | |
Lj5g3v1811810.1 | GATA family protein | |
Lj5g3v1811810.2 | GATA family protein | |
Lj6g3v1270770.1 | GATA family protein |
GATA factors were first identified as proteins that interact with conserved WGATAR (W = T or A; R = G or A) motifs involved in erythroid-specific gene expressionin vertebrates.
GATA factors are characterised by the presence of conserved, type-IV zinc-finger motifs Animal factors typically contain two C-x2-Cx17-C-x2-C zinc-finger domains. The majority of known fungal GATA factors contain a single C-x2-C-x17-C-x2-C finger with greatest similarity to the carboxyl (C) terminal finger of animal GATA factors.Several examples of fungal GATA factors containing a variant C-x2-C-x18-C-x2-C DNA-binding domain are also known.
Examples of both C-x2-C-x17-Cx2-C (Type IVa) and C-x2-C-x18-C-x2-C (Type IVb) GATA factors are found within fungi; animals onlycontain the former configuration, and plants only the latter. Plant GATA factors typically contain a single zinc finger. The Arabidopsis type-IV zinc-finger proteins may represent the previously defined family of nuclear GATA-binding proteins implicated in light-responsive transcription.
Teakle GR, Manfield IW, Graham JF, Gilmartin PM.
Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics.
Plant Mol Biol. 2002 Sep;50(1):43-57.
PMID: 12139008