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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Species | TF ID | Description |
---|---|---|
Hordeum vulgare (32) | MLOC_10364.1 | GATA family protein |
MLOC_15510.1 | GATA family protein | |
MLOC_17061.3 | GATA family protein | |
MLOC_17061.4 | GATA family protein | |
MLOC_22000.1 | GATA family protein | |
MLOC_3107.1 | GATA family protein | |
MLOC_3107.2 | GATA family protein | |
MLOC_39421.1 | GATA family protein | |
MLOC_5372.1 | GATA family protein | |
MLOC_54886.2 | GATA family protein | |
MLOC_54886.3 | GATA family protein | |
MLOC_56963.1 | GATA family protein | |
MLOC_56963.2 | GATA family protein | |
MLOC_56963.3 | GATA family protein | |
MLOC_57142.1 | GATA family protein | |
MLOC_57142.6 | GATA family protein | |
MLOC_57142.7 | GATA family protein | |
MLOC_57142.8 | GATA family protein | |
MLOC_58725.1 | GATA family protein | |
MLOC_6017.11 | GATA family protein | |
MLOC_6017.7 | GATA family protein | |
MLOC_6017.8 | GATA family protein | |
MLOC_62522.1 | GATA family protein | |
MLOC_62522.2 | GATA family protein | |
MLOC_70809.1 | GATA family protein | |
MLOC_70809.2 | GATA family protein | |
MLOC_70809.3 | GATA family protein | |
MLOC_71376.1 | GATA family protein | |
MLOC_71376.2 | GATA family protein | |
MLOC_71376.3 | GATA family protein | |
MLOC_71376.4 | GATA family protein | |
MLOC_75188.1 | GATA family protein |
GATA factors were first identified as proteins that interact with conserved WGATAR (W = T or A; R = G or A) motifs involved in erythroid-specific gene expressionin vertebrates.
GATA factors are characterised by the presence of conserved, type-IV zinc-finger motifs Animal factors typically contain two C-x2-Cx17-C-x2-C zinc-finger domains. The majority of known fungal GATA factors contain a single C-x2-C-x17-C-x2-C finger with greatest similarity to the carboxyl (C) terminal finger of animal GATA factors.Several examples of fungal GATA factors containing a variant C-x2-C-x18-C-x2-C DNA-binding domain are also known.
Examples of both C-x2-C-x17-Cx2-C (Type IVa) and C-x2-C-x18-C-x2-C (Type IVb) GATA factors are found within fungi; animals onlycontain the former configuration, and plants only the latter. Plant GATA factors typically contain a single zinc finger. The Arabidopsis type-IV zinc-finger proteins may represent the previously defined family of nuclear GATA-binding proteins implicated in light-responsive transcription.
Teakle GR, Manfield IW, Graham JF, Gilmartin PM.
Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics.
Plant Mol Biol. 2002 Sep;50(1):43-57.
PMID: 12139008