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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Species | TF ID | Description |
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EcC003705.30 | GATA family protein | |
EcC008330.10 | GATA family protein | |
EcC012760.10 | GATA family protein | |
EcC018151.10 | GATA family protein | |
EcC022275.10 | GATA family protein | |
EcC023187.10 | GATA family protein | |
EcC028057.20 | GATA family protein | |
EcC028521.10 | GATA family protein | |
EcC033675.40 | GATA family protein | |
EcC039516.20 | GATA family protein | |
EcC040945.10 | GATA family protein | |
EcC050611.10 | GATA family protein | |
EcC050801.10 | GATA family protein | |
EcC051183.20 | GATA family protein | |
EcC051371.20 | GATA family protein | |
EcC054296.10 | GATA family protein | |
EcC054809.10 | GATA family protein | |
EcC054953.60 | GATA family protein | |
EcC055011.160 | GATA family protein | |
EcC055196.40 | GATA family protein | |
EcC055222.270 | GATA family protein |
GATA factors were first identified as proteins that interact with conserved WGATAR (W = T or A; R = G or A) motifs involved in erythroid-specific gene expressionin vertebrates.
GATA factors are characterised by the presence of conserved, type-IV zinc-finger motifs Animal factors typically contain two C-x2-Cx17-C-x2-C zinc-finger domains. The majority of known fungal GATA factors contain a single C-x2-C-x17-C-x2-C finger with greatest similarity to the carboxyl (C) terminal finger of animal GATA factors.Several examples of fungal GATA factors containing a variant C-x2-C-x18-C-x2-C DNA-binding domain are also known.
Examples of both C-x2-C-x17-Cx2-C (Type IVa) and C-x2-C-x18-C-x2-C (Type IVb) GATA factors are found within fungi; animals onlycontain the former configuration, and plants only the latter. Plant GATA factors typically contain a single zinc finger. The Arabidopsis type-IV zinc-finger proteins may represent the previously defined family of nuclear GATA-binding proteins implicated in light-responsive transcription.
Teakle GR, Manfield IW, Graham JF, Gilmartin PM.
Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics.
Plant Mol Biol. 2002 Sep;50(1):43-57.
PMID: 12139008