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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Species | TF ID | Description |
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Citrus sinensis (55) | orange1.1g009151m | GATA family protein |
orange1.1g009155m | GATA family protein | |
orange1.1g009205m | GATA family protein | |
orange1.1g009221m | GATA family protein | |
orange1.1g013454m | GATA family protein | |
orange1.1g016706m | GATA family protein | |
orange1.1g016724m | GATA family protein | |
orange1.1g017195m | GATA family protein | |
orange1.1g017321m | GATA family protein | |
orange1.1g017348m | GATA family protein | |
orange1.1g017356m | GATA family protein | |
orange1.1g017390m | GATA family protein | |
orange1.1g017409m | GATA family protein | |
orange1.1g017834m | GATA family protein | |
orange1.1g017958m | GATA family protein | |
orange1.1g018277m | GATA family protein | |
orange1.1g018626m | GATA family protein | |
orange1.1g018641m | GATA family protein | |
orange1.1g018653m | GATA family protein | |
orange1.1g018981m | GATA family protein | |
orange1.1g019919m | GATA family protein | |
orange1.1g020987m | GATA family protein | |
orange1.1g020996m | GATA family protein | |
orange1.1g021178m | GATA family protein | |
orange1.1g021193m | GATA family protein | |
orange1.1g021329m | GATA family protein | |
orange1.1g021455m | GATA family protein | |
orange1.1g021461m | GATA family protein | |
orange1.1g021859m | GATA family protein | |
orange1.1g022728m | GATA family protein | |
orange1.1g022924m | GATA family protein | |
orange1.1g023560m | GATA family protein | |
orange1.1g023588m | GATA family protein | |
orange1.1g023724m | GATA family protein | |
orange1.1g023942m | GATA family protein | |
orange1.1g024594m | GATA family protein | |
orange1.1g024757m | GATA family protein | |
orange1.1g024771m | GATA family protein | |
orange1.1g024832m | GATA family protein | |
orange1.1g025137m | GATA family protein | |
orange1.1g025411m | GATA family protein | |
orange1.1g026433m | GATA family protein | |
orange1.1g026465m | GATA family protein | |
orange1.1g026490m | GATA family protein | |
orange1.1g026843m | GATA family protein | |
orange1.1g027756m | GATA family protein | |
orange1.1g027800m | GATA family protein | |
orange1.1g030237m | GATA family protein | |
orange1.1g030971m | GATA family protein | |
orange1.1g032112m | GATA family protein | |
orange1.1g033001m | GATA family protein | |
orange1.1g033547m | GATA family protein | |
orange1.1g037152m | GATA family protein | |
orange1.1g044150m | GATA family protein | |
orange1.1g047722m | GATA family protein |
GATA factors were first identified as proteins that interact with conserved WGATAR (W = T or A; R = G or A) motifs involved in erythroid-specific gene expressionin vertebrates.
GATA factors are characterised by the presence of conserved, type-IV zinc-finger motifs Animal factors typically contain two C-x2-Cx17-C-x2-C zinc-finger domains. The majority of known fungal GATA factors contain a single C-x2-C-x17-C-x2-C finger with greatest similarity to the carboxyl (C) terminal finger of animal GATA factors.Several examples of fungal GATA factors containing a variant C-x2-C-x18-C-x2-C DNA-binding domain are also known.
Examples of both C-x2-C-x17-Cx2-C (Type IVa) and C-x2-C-x18-C-x2-C (Type IVb) GATA factors are found within fungi; animals onlycontain the former configuration, and plants only the latter. Plant GATA factors typically contain a single zinc finger. The Arabidopsis type-IV zinc-finger proteins may represent the previously defined family of nuclear GATA-binding proteins implicated in light-responsive transcription.
Teakle GR, Manfield IW, Graham JF, Gilmartin PM.
Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics.
Plant Mol Biol. 2002 Sep;50(1):43-57.
PMID: 12139008