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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Species | TF ID | Description |
---|---|---|
Capsella rubella (35) | Carubv10001360m | GATA family protein |
Carubv10003065m | GATA family protein | |
Carubv10005113m | GATA family protein | |
Carubv10005152m | GATA family protein | |
Carubv10005459m | GATA family protein | |
Carubv10005462m | GATA family protein | |
Carubv10005463m | GATA family protein | |
Carubv10005611m | GATA family protein | |
Carubv10005860m | GATA family protein | |
Carubv10006355m | GATA family protein | |
Carubv10007115m | GATA family protein | |
Carubv10007612m | GATA family protein | |
Carubv10009866m | GATA family protein | |
Carubv10009871m | GATA family protein | |
Carubv10009872m | GATA family protein | |
Carubv10014365m | GATA family protein | |
Carubv10014541m | GATA family protein | |
Carubv10014554m | GATA family protein | |
Carubv10014665m | GATA family protein | |
Carubv10014841m | GATA family protein | |
Carubv10016131m | GATA family protein | |
Carubv10016445m | GATA family protein | |
Carubv10017445m | GATA family protein | |
Carubv10017647m | GATA family protein | |
Carubv10017765m | GATA family protein | |
Carubv10017916m | GATA family protein | |
Carubv10019160m | GATA family protein | |
Carubv10023643m | GATA family protein | |
Carubv10023774m | GATA family protein | |
Carubv10023820m | GATA family protein | |
Carubv10026556m | GATA family protein | |
Carubv10026597m | GATA family protein | |
Carubv10026725m | GATA family protein | |
Carubv10026726m | GATA family protein | |
Carubv10027332m | GATA family protein |
GATA factors were first identified as proteins that interact with conserved WGATAR (W = T or A; R = G or A) motifs involved in erythroid-specific gene expressionin vertebrates.
GATA factors are characterised by the presence of conserved, type-IV zinc-finger motifs Animal factors typically contain two C-x2-Cx17-C-x2-C zinc-finger domains. The majority of known fungal GATA factors contain a single C-x2-C-x17-C-x2-C finger with greatest similarity to the carboxyl (C) terminal finger of animal GATA factors.Several examples of fungal GATA factors containing a variant C-x2-C-x18-C-x2-C DNA-binding domain are also known.
Examples of both C-x2-C-x17-Cx2-C (Type IVa) and C-x2-C-x18-C-x2-C (Type IVb) GATA factors are found within fungi; animals onlycontain the former configuration, and plants only the latter. Plant GATA factors typically contain a single zinc finger. The Arabidopsis type-IV zinc-finger proteins may represent the previously defined family of nuclear GATA-binding proteins implicated in light-responsive transcription.
Teakle GR, Manfield IW, Graham JF, Gilmartin PM.
Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics.
Plant Mol Biol. 2002 Sep;50(1):43-57.
PMID: 12139008