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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Species | TF ID | Description |
---|---|---|
Ananas comosus (18) | Aco000199.1 | GATA family protein |
Aco000670.1 | GATA family protein | |
Aco005182.1 | GATA family protein | |
Aco005280.1 | GATA family protein | |
Aco005381.1 | GATA family protein | |
Aco005438.1 | GATA family protein | |
Aco005745.1 | GATA family protein | |
Aco005995.1 | GATA family protein | |
Aco006191.1 | GATA family protein | |
Aco007392.1 | GATA family protein | |
Aco009903.1 | GATA family protein | |
Aco010081.1 | GATA family protein | |
Aco011659.1 | GATA family protein | |
Aco011713.1 | GATA family protein | |
Aco012875.1 | GATA family protein | |
Aco012921.1 | GATA family protein | |
Aco016259.1 | GATA family protein | |
Aco021314.1 | GATA family protein |
GATA factors were first identified as proteins that interact with conserved WGATAR (W = T or A; R = G or A) motifs involved in erythroid-specific gene expressionin vertebrates.
GATA factors are characterised by the presence of conserved, type-IV zinc-finger motifs Animal factors typically contain two C-x2-Cx17-C-x2-C zinc-finger domains. The majority of known fungal GATA factors contain a single C-x2-C-x17-C-x2-C finger with greatest similarity to the carboxyl (C) terminal finger of animal GATA factors.Several examples of fungal GATA factors containing a variant C-x2-C-x18-C-x2-C DNA-binding domain are also known.
Examples of both C-x2-C-x17-Cx2-C (Type IVa) and C-x2-C-x18-C-x2-C (Type IVb) GATA factors are found within fungi; animals onlycontain the former configuration, and plants only the latter. Plant GATA factors typically contain a single zinc finger. The Arabidopsis type-IV zinc-finger proteins may represent the previously defined family of nuclear GATA-binding proteins implicated in light-responsive transcription.
Teakle GR, Manfield IW, Graham JF, Gilmartin PM.
Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics.
Plant Mol Biol. 2002 Sep;50(1):43-57.
PMID: 12139008